miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 33680 0.66 0.817934
Target:  5'- cGGCCgUgGCCcGCACGUAacGCUGCAGc -3'
miRNA:   3'- aCCGG-AgCGGuCGUGUGU--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 34558 0.66 0.825381
Target:  5'- cGGCCUUGuggucggggugcaCCAgGCugACgccgGGCUGCAGg -3'
miRNA:   3'- aCCGGAGC-------------GGU-CGugUG----UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 36431 0.71 0.551464
Target:  5'- aGGCCUCGUacGUGCAgGGCUGCAu- -3'
miRNA:   3'- aCCGGAGCGguCGUGUgUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 40834 0.67 0.765286
Target:  5'- gGGCCcgCGCCAuGgACACcuuGCUGCAc- -3'
miRNA:   3'- aCCGGa-GCGGU-CgUGUGu--CGACGUca -5'
13934 5' -59.7 NC_003521.1 + 42017 0.67 0.746765
Target:  5'- cGGCaCgacagacgcCGCCGGCACcacGCAGCUGCu-- -3'
miRNA:   3'- aCCG-Ga--------GCGGUCGUG---UGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 43240 0.7 0.570916
Target:  5'- aGGUCgucggugggCGCCGGCgggucgcgcucGCugGGCUGCAGg -3'
miRNA:   3'- aCCGGa--------GCGGUCG-----------UGugUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 45076 0.67 0.774385
Target:  5'- cGGCCUCGUgCAGCugcgugaGCAuCUGCAGc -3'
miRNA:   3'- aCCGGAGCG-GUCGug-----UGUcGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 45289 0.66 0.8262
Target:  5'- aGGUCUCGCCcu-GCACGGCcGUGGg -3'
miRNA:   3'- aCCGGAGCGGucgUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 47938 0.66 0.806097
Target:  5'- -uGCCgugUCGUCGGCGCACAGCaucucaggagccgGCGGg -3'
miRNA:   3'- acCGG---AGCGGUCGUGUGUCGa------------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 49858 0.72 0.485262
Target:  5'- cGGCCUCGuCCAGCAUGCucauGaugGCGGUc -3'
miRNA:   3'- aCCGGAGC-GGUCGUGUGu---Cga-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 52970 0.69 0.669583
Target:  5'- cGGgCUCacuuuCUAGCGCGCGGaCUGCAGa -3'
miRNA:   3'- aCCgGAGc----GGUCGUGUGUC-GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 54410 0.68 0.679415
Target:  5'- cGGCCUcuccaaCGCCGGCGguaGCAGCaUGCAc- -3'
miRNA:   3'- aCCGGA------GCGGUCGUg--UGUCG-ACGUca -5'
13934 5' -59.7 NC_003521.1 + 55507 0.67 0.782472
Target:  5'- cGGgCUCGCCGGCGagccgcuCGgGGCUGUAu- -3'
miRNA:   3'- aCCgGAGCGGUCGU-------GUgUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 55736 0.71 0.541813
Target:  5'- aGcGCCUC-CCAGCGCGCGgGCgGCAGc -3'
miRNA:   3'- aC-CGGAGcGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 56072 0.7 0.600384
Target:  5'- cGGCCUCcgucaCCAGCucGCGCAGCacgcGCAGa -3'
miRNA:   3'- aCCGGAGc----GGUCG--UGUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 57145 0.72 0.458053
Target:  5'- aGGUCUCGUCGGC-CACGcGCgGCAGg -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 59048 0.71 0.532217
Target:  5'- aUGcGUCgUCGCCGGCGCGCGccgccCUGCAGUg -3'
miRNA:   3'- -AC-CGG-AGCGGUCGUGUGUc----GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 59619 0.7 0.610259
Target:  5'- cGGCCcCGgCGGCGacCGCGGCUcGCAGg -3'
miRNA:   3'- aCCGGaGCgGUCGU--GUGUCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 60278 0.69 0.659722
Target:  5'- aGGCCggUGCUGuCGCGCuGCUGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUcGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 63347 0.66 0.817934
Target:  5'- gGGCagcgCGCCGGC--GCAGCUGUAc- -3'
miRNA:   3'- aCCGga--GCGGUCGugUGUCGACGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.