miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 219202 0.71 0.551464
Target:  5'- aGGCCcaugauggcggUCGCCAGgcaGCAgAGUUGCAGg -3'
miRNA:   3'- aCCGG-----------AGCGGUCg--UGUgUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 218804 0.69 0.663669
Target:  5'- cGGCCUCGCCuGGCAgcucuccugcaccuuCACGGuCUGCc-- -3'
miRNA:   3'- aCCGGAGCGG-UCGU---------------GUGUC-GACGuca -5'
13934 5' -59.7 NC_003521.1 + 218619 0.73 0.4146
Target:  5'- cGGCC--GCCAGCGCGCGGCgguaaGCGGc -3'
miRNA:   3'- aCCGGagCGGUCGUGUGUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 216527 0.69 0.669583
Target:  5'- aGGaCCUCgaaucgcucgaGCCAGCACAguGCaGCGGc -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUguCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 215708 0.71 0.513218
Target:  5'- cGGCCUggCGCCAGCACccGCGGCUcuGCu-- -3'
miRNA:   3'- aCCGGA--GCGGUCGUG--UGUCGA--CGuca -5'
13934 5' -59.7 NC_003521.1 + 214539 0.66 0.800935
Target:  5'- cUGGCCUCcuccuaCCAGCugauGCACAagauGCUGCuGUg -3'
miRNA:   3'- -ACCGGAGc-----GGUCG----UGUGU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 213852 0.68 0.679415
Target:  5'- cUGGUCaUCGCCGGCugcuacgugGCGCuGCUGuCGGUc -3'
miRNA:   3'- -ACCGG-AGCGGUCG---------UGUGuCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 213713 0.68 0.717337
Target:  5'- gGGCCUCGgggaugcCCAGcCAgACGGCgccGCAGa -3'
miRNA:   3'- aCCGGAGC-------GGUC-GUgUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 209216 0.67 0.774385
Target:  5'- gUGGCCcUGCCAGCugACc-CUGCcgAGUa -3'
miRNA:   3'- -ACCGGaGCGGUCGugUGucGACG--UCA- -5'
13934 5' -59.7 NC_003521.1 + 208616 0.67 0.756077
Target:  5'- cGGCCauaGCCAGuCAcCGCGGUgagGCAGa -3'
miRNA:   3'- aCCGGag-CGGUC-GU-GUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 201668 0.69 0.659723
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 201533 0.68 0.698961
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 200560 0.7 0.600383
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 200085 1.06 0.002525
Target:  5'- uUGGCCUCGCCAGCACACAGCUGCAGUc -3'
miRNA:   3'- -ACCGGAGCGGUCGUGUGUCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 197445 0.7 0.561167
Target:  5'- aUGGCCaggcggCGCCAGCGCAU-GCUcugGCGGa -3'
miRNA:   3'- -ACCGGa-----GCGGUCGUGUGuCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 197026 0.67 0.737358
Target:  5'- cGGUCgCGCCGGC-CGgGGCaGCAGa -3'
miRNA:   3'- aCCGGaGCGGUCGuGUgUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 196726 0.66 0.8262
Target:  5'- gGGCCgagUGCCAGCggagguucGCGCGGCaGCcGg -3'
miRNA:   3'- aCCGGa--GCGGUCG--------UGUGUCGaCGuCa -5'
13934 5' -59.7 NC_003521.1 + 196048 0.7 0.600384
Target:  5'- cGGCCUaggGCCAGCAC-CGGCcgccuuccGCGGUc -3'
miRNA:   3'- aCCGGAg--CGGUCGUGuGUCGa-------CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 195616 0.76 0.29398
Target:  5'- cGGCC-CGCCAGCugguCGCGuuGCUGCAGc -3'
miRNA:   3'- aCCGGaGCGGUCGu---GUGU--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 192127 0.71 0.551464
Target:  5'- cGGCCUCGUCGGCucCGuCGGCguccGCGGa -3'
miRNA:   3'- aCCGGAGCGGUCGu-GU-GUCGa---CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.