miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 30967 0.71 0.513218
Target:  5'- aGGCgCUCGgCAcGCAgcaGCAGCUGCGGa -3'
miRNA:   3'- aCCG-GAGCgGU-CGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 105852 0.71 0.513218
Target:  5'- cGGCUgCGCCGGCggcggcgacgACACGGCgGCGGa -3'
miRNA:   3'- aCCGGaGCGGUCG----------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 215708 0.71 0.513218
Target:  5'- cGGCCUggCGCCAGCACccGCGGCUcuGCu-- -3'
miRNA:   3'- aCCGGA--GCGGUCGUG--UGUCGA--CGuca -5'
13934 5' -59.7 NC_003521.1 + 149485 0.71 0.522684
Target:  5'- cGGCUUCGCCGGacagACGCcGCUGCGc- -3'
miRNA:   3'- aCCGGAGCGGUCg---UGUGuCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 59048 0.71 0.532217
Target:  5'- aUGcGUCgUCGCCGGCGCGCGccgccCUGCAGUg -3'
miRNA:   3'- -AC-CGG-AGCGGUCGUGUGUc----GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 154913 0.71 0.532217
Target:  5'- cGGCCUCgGCCAGCGgCACGuGCUuGCuGa -3'
miRNA:   3'- aCCGGAG-CGGUCGU-GUGU-CGA-CGuCa -5'
13934 5' -59.7 NC_003521.1 + 102487 0.71 0.532218
Target:  5'- aGGCCcgagaCGCCGuCGCGCAGCcGCAGg -3'
miRNA:   3'- aCCGGa----GCGGUcGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 119158 0.71 0.532218
Target:  5'- cGGcCCUCcgaggaaacagGCCGGCGCGCAGCUGgAu- -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUGUCGACgUca -5'
13934 5' -59.7 NC_003521.1 + 142589 0.71 0.536048
Target:  5'- cGGCCUCGCgCAcccaguugcgacgacGCGCGCGGCUgggccgcuGCAGc -3'
miRNA:   3'- aCCGGAGCG-GU---------------CGUGUGUCGA--------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 191886 0.71 0.541812
Target:  5'- -cGCUUCGCC-GCGCACAGCaaacaGCAGa -3'
miRNA:   3'- acCGGAGCGGuCGUGUGUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 55736 0.71 0.541813
Target:  5'- aGcGCCUC-CCAGCGCGCGgGCgGCAGc -3'
miRNA:   3'- aC-CGGAGcGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 36431 0.71 0.551464
Target:  5'- aGGCCUCGUacGUGCAgGGCUGCAu- -3'
miRNA:   3'- aCCGGAGCGguCGUGUgUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 122678 0.71 0.551464
Target:  5'- aGGCg-C-CCAGCACcgACAGCUGCGGg -3'
miRNA:   3'- aCCGgaGcGGUCGUG--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 219202 0.71 0.551464
Target:  5'- aGGCCcaugauggcggUCGCCAGgcaGCAgAGUUGCAGg -3'
miRNA:   3'- aCCGG-----------AGCGGUCg--UGUgUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 192127 0.71 0.551464
Target:  5'- cGGCCUCGUCGGCucCGuCGGCguccGCGGa -3'
miRNA:   3'- aCCGGAGCGGUCGu-GU-GUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 150973 0.71 0.551464
Target:  5'- cGGCCgagaGCCAGUcgccgccgGCGCAGCaGCAGc -3'
miRNA:   3'- aCCGGag--CGGUCG--------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 223467 0.7 0.559223
Target:  5'- gGGCCgccgCGCCGGCGuCACGGCccgggaggugggGCGGa -3'
miRNA:   3'- aCCGGa---GCGGUCGU-GUGUCGa-----------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 113983 0.7 0.561167
Target:  5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3'
miRNA:   3'- aCCGGagCGG-UCGUGuGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 70139 0.7 0.561167
Target:  5'- gGGCCUCGagcugCGGCgaGCGCGGCUGCc-- -3'
miRNA:   3'- aCCGGAGCg----GUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 197445 0.7 0.561167
Target:  5'- aUGGCCaggcggCGCCAGCGCAU-GCUcugGCGGa -3'
miRNA:   3'- -ACCGGa-----GCGGUCGUGUGuCGA---CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.