miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 240755 0.7 0.600384
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 239782 0.68 0.698962
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 239647 0.69 0.659722
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 235227 0.68 0.698961
Target:  5'- aGGCCUCGUUGGUcCGCAGgCUGgAGc -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGUC-GACgUCa -5'
13934 5' -59.7 NC_003521.1 + 234668 0.75 0.321369
Target:  5'- gGaGCCggaGCCGGCGCAuUGGCUGCAGUa -3'
miRNA:   3'- aC-CGGag-CGGUCGUGU-GUCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 234372 0.66 0.792217
Target:  5'- gGGUCUCGCCguGGUGCAgGGCcugacGCAGc -3'
miRNA:   3'- aCCGGAGCGG--UCGUGUgUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 226861 0.72 0.476104
Target:  5'- aGGCCcaucagggCGuCCAGCGaggGCAGCUGCGGg -3'
miRNA:   3'- aCCGGa-------GC-GGUCGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 226622 0.69 0.659723
Target:  5'- gGGgCUCGCCgcAGCACAcCAGCUugcucGCGGc -3'
miRNA:   3'- aCCgGAGCGG--UCGUGU-GUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 226164 0.69 0.617181
Target:  5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3'
miRNA:   3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 224862 0.68 0.707693
Target:  5'- aGGCCguagcgcgccagcUCGUCcaggugcuuGGCGCACAGCaGCAGa -3'
miRNA:   3'- aCCGG-------------AGCGG---------UCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 224594 0.66 0.8262
Target:  5'- cGGCgaCGCUacgAGCACG-GGCUGCGGc -3'
miRNA:   3'- aCCGgaGCGG---UCGUGUgUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 223922 0.69 0.639947
Target:  5'- aGGCCgaggCGCagcGCugGCAGCUggGCAGg -3'
miRNA:   3'- aCCGGa---GCGgu-CGugUGUCGA--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 223732 0.68 0.727867
Target:  5'- gGGCCgugaCGCCGGCGCgGCGGCc-CAGa -3'
miRNA:   3'- aCCGGa---GCGGUCGUG-UGUCGacGUCa -5'
13934 5' -59.7 NC_003521.1 + 223467 0.7 0.559223
Target:  5'- gGGCCgccgCGCCGGCGuCACGGCccgggaggugggGCGGa -3'
miRNA:   3'- aCCGGa---GCGGUCGU-GUGUCGa-----------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 223120 0.68 0.708661
Target:  5'- cGGCCgucUCGCgCAGCAC-CAGgaGcCAGUu -3'
miRNA:   3'- aCCGG---AGCG-GUCGUGuGUCgaC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 221898 0.67 0.756077
Target:  5'- gGGCggaUUGCCGGCGCGCGGC-GCc-- -3'
miRNA:   3'- aCCGg--AGCGGUCGUGUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 221205 0.7 0.600383
Target:  5'- cGGCCgCGUCGGCGCugAuccuGCUGCuGUu -3'
miRNA:   3'- aCCGGaGCGGUCGUGugU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 220826 0.69 0.630047
Target:  5'- -aGCCgUCGCCGGUACGCucAGCggagUGCGGUg -3'
miRNA:   3'- acCGG-AGCGGUCGUGUG--UCG----ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 220796 0.68 0.698961
Target:  5'- nUGGaUCUCGCCGGCGCcauGCAGCacCAGg -3'
miRNA:   3'- -ACC-GGAGCGGUCGUG---UGUCGacGUCa -5'
13934 5' -59.7 NC_003521.1 + 219431 0.68 0.726914
Target:  5'- gGGCCguaucccagCGCUcGCACAgcucgguCAGCUGCGGc -3'
miRNA:   3'- aCCGGa--------GCGGuCGUGU-------GUCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.