Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 116584 | 0.65 | 0.833499 |
Target: 5'- cUGGUCUCGCgCGGCccucccuGCAagucGCUGCGGc -3' miRNA: 3'- -ACCGGAGCG-GUCG-------UGUgu--CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 153628 | 0.65 | 0.832694 |
Target: 5'- gGGCUgUGCCGGCACcagaagaucugcCAGCUGCuGa -3' miRNA: 3'- aCCGGaGCGGUCGUGu-----------GUCGACGuCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 28983 | 0.65 | 0.832694 |
Target: 5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3' miRNA: 3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 138027 | 0.66 | 0.792217 |
Target: 5'- cGuGCgUCgcuGCCGGCGCACggGGCUGUGGg -3' miRNA: 3'- aC-CGgAG---CGGUCGUGUG--UCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 64750 | 0.66 | 0.80951 |
Target: 5'- gUGGCCaagaCGCCGGCcgGCGCGGCaccggGCGa- -3' miRNA: 3'- -ACCGGa---GCGGUCG--UGUGUCGa----CGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 74174 | 0.66 | 0.817934 |
Target: 5'- cUGGCCgacugCGCCgcGGCGCcCGGCgcGCGGc -3' miRNA: 3'- -ACCGGa----GCGG--UCGUGuGUCGa-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 18691 | 0.66 | 0.817934 |
Target: 5'- gGGUUUCGCCauggccGGCGCGaucCGGCUGUGGc -3' miRNA: 3'- aCCGGAGCGG------UCGUGU---GUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 172333 | 0.66 | 0.80007 |
Target: 5'- aGGCCUCgGCCguccuguGGCACACGuCggGCGGg -3' miRNA: 3'- aCCGGAG-CGG-------UCGUGUGUcGa-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 25774 | 0.66 | 0.817934 |
Target: 5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3' miRNA: 3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 83467 | 0.66 | 0.795721 |
Target: 5'- cUGGCCcaCGuCCAGCAUuucGCgguccugcccguagcGGCUGCGGUa -3' miRNA: 3'- -ACCGGa-GC-GGUCGUG---UG---------------UCGACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 100512 | 0.66 | 0.8262 |
Target: 5'- gGGCgUCGgaCGGUGCACGGUgGCGGg -3' miRNA: 3'- aCCGgAGCg-GUCGUGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 124454 | 0.66 | 0.792217 |
Target: 5'- gGGCCgCGgCGGCACGCGuucgccgccgcGCUcGCGGUc -3' miRNA: 3'- aCCGGaGCgGUCGUGUGU-----------CGA-CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 75987 | 0.66 | 0.792217 |
Target: 5'- cGGcCCUCGCCgGGCGCcguCAGCacGUAGa -3' miRNA: 3'- aCC-GGAGCGG-UCGUGu--GUCGa-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 109387 | 0.66 | 0.797465 |
Target: 5'- aGGCCaggucgcggaaggCGCUcagGGUGCGCGGCUGCAu- -3' miRNA: 3'- aCCGGa------------GCGG---UCGUGUGUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 29129 | 0.66 | 0.817934 |
Target: 5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3' miRNA: 3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 136861 | 0.66 | 0.792217 |
Target: 5'- gGGCCUgCGCUgucccgacaAGCGCAUcucgGGCUcGCAGa -3' miRNA: 3'- aCCGGA-GCGG---------UCGUGUG----UCGA-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 115415 | 0.66 | 0.792217 |
Target: 5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3' miRNA: 3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 33242 | 0.66 | 0.817934 |
Target: 5'- cGGCgUUgaGCUGGCACACGcGCaGCAGg -3' miRNA: 3'- aCCGgAG--CGGUCGUGUGU-CGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 34558 | 0.66 | 0.825381 |
Target: 5'- cGGCCUUGuggucggggugcaCCAgGCugACgccgGGCUGCAGg -3' miRNA: 3'- aCCGGAGC-------------GGU-CGugUG----UCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 85443 | 0.66 | 0.8262 |
Target: 5'- cGGCCUCGUCGuccGCGC-CGGCgagaaagGUGGUc -3' miRNA: 3'- aCCGGAGCGGU---CGUGuGUCGa------CGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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