miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 116584 0.65 0.833499
Target:  5'- cUGGUCUCGCgCGGCccucccuGCAagucGCUGCGGc -3'
miRNA:   3'- -ACCGGAGCG-GUCG-------UGUgu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 153628 0.65 0.832694
Target:  5'- gGGCUgUGCCGGCACcagaagaucugcCAGCUGCuGa -3'
miRNA:   3'- aCCGGaGCGGUCGUGu-----------GUCGACGuCa -5'
13934 5' -59.7 NC_003521.1 + 28983 0.65 0.832694
Target:  5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3'
miRNA:   3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 29129 0.66 0.817934
Target:  5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3'
miRNA:   3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 33680 0.66 0.817934
Target:  5'- cGGCCgUgGCCcGCACGUAacGCUGCAGc -3'
miRNA:   3'- aCCGG-AgCGGuCGUGUGU--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 18691 0.66 0.817934
Target:  5'- gGGUUUCGCCauggccGGCGCGaucCGGCUGUGGc -3'
miRNA:   3'- aCCGGAGCGG------UCGUGU---GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 172333 0.66 0.80007
Target:  5'- aGGCCUCgGCCguccuguGGCACACGuCggGCGGg -3'
miRNA:   3'- aCCGGAG-CGG-------UCGUGUGUcGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 75987 0.66 0.792217
Target:  5'- cGGcCCUCGCCgGGCGCcguCAGCacGUAGa -3'
miRNA:   3'- aCC-GGAGCGG-UCGUGu--GUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 167348 0.66 0.817934
Target:  5'- cGGCCUCGUagaAGaCGaucgACAGCUGCugGGUa -3'
miRNA:   3'- aCCGGAGCGg--UC-GUg---UGUCGACG--UCA- -5'
13934 5' -59.7 NC_003521.1 + 33242 0.66 0.817934
Target:  5'- cGGCgUUgaGCUGGCACACGcGCaGCAGg -3'
miRNA:   3'- aCCGgAG--CGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 25774 0.66 0.817934
Target:  5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3'
miRNA:   3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 85443 0.66 0.8262
Target:  5'- cGGCCUCGUCGuccGCGC-CGGCgagaaagGUGGUc -3'
miRNA:   3'- aCCGGAGCGGU---CGUGuGUCGa------CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 70213 0.66 0.80951
Target:  5'- cGGCCcucgaagCGCuUGGCGCGCAGCagggcuagGCAGg -3'
miRNA:   3'- aCCGGa------GCG-GUCGUGUGUCGa-------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 74174 0.66 0.817934
Target:  5'- cUGGCCgacugCGCCgcGGCGCcCGGCgcGCGGc -3'
miRNA:   3'- -ACCGGa----GCGG--UCGUGuGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 34558 0.66 0.825381
Target:  5'- cGGCCUUGuggucggggugcaCCAgGCugACgccgGGCUGCAGg -3'
miRNA:   3'- aCCGGAGC-------------GGU-CGugUG----UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 124454 0.66 0.792217
Target:  5'- gGGCCgCGgCGGCACGCGuucgccgccgcGCUcGCGGUc -3'
miRNA:   3'- aCCGGaGCgGUCGUGUGU-----------CGA-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 109387 0.66 0.797465
Target:  5'- aGGCCaggucgcggaaggCGCUcagGGUGCGCGGCUGCAu- -3'
miRNA:   3'- aCCGGa------------GCGG---UCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 115415 0.66 0.792217
Target:  5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3'
miRNA:   3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 136861 0.66 0.792217
Target:  5'- gGGCCUgCGCUgucccgacaAGCGCAUcucgGGCUcGCAGa -3'
miRNA:   3'- aCCGGA-GCGG---------UCGUGUG----UCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 100512 0.66 0.8262
Target:  5'- gGGCgUCGgaCGGUGCACGGUgGCGGg -3'
miRNA:   3'- aCCGgAGCg-GUCGUGUGUCGaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.