miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 206 0.7 0.600384
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 681 1.06 0.002525
Target:  5'- uUGGCCUCGCCAGCACACAGCUGCAGUc -3'
miRNA:   3'- -ACCGGAGCGGUCGUGUGUCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 2738 0.72 0.449165
Target:  5'- -cGCCUCGCUGGCugGCuGCUGCu-- -3'
miRNA:   3'- acCGGAGCGGUCGugUGuCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 5797 0.66 0.816261
Target:  5'- cGGCCgCGCCGGCugccgucaccguCGCuGCUGCu-- -3'
miRNA:   3'- aCCGGaGCGGUCGu-----------GUGuCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 18691 0.66 0.817934
Target:  5'- gGGUUUCGCCauggccGGCGCGaucCGGCUGUGGc -3'
miRNA:   3'- aCCGGAGCGG------UCGUGU---GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 23809 0.66 0.800069
Target:  5'- cGGCCUCGCUgaAGCuGCAUgucaccgugaugaGGCUGCu-- -3'
miRNA:   3'- aCCGGAGCGG--UCG-UGUG-------------UCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 25774 0.66 0.817934
Target:  5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3'
miRNA:   3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 26540 0.67 0.746765
Target:  5'- cUGGCCUCGagaCCGGUGcCugGGgUGCAGc -3'
miRNA:   3'- -ACCGGAGC---GGUCGU-GugUCgACGUCa -5'
13934 5' -59.7 NC_003521.1 + 27100 0.69 0.669583
Target:  5'- aGGCuCUCGaCGGCGCGCAgGCcggUGCGGg -3'
miRNA:   3'- aCCG-GAGCgGUCGUGUGU-CG---ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 28401 0.69 0.659722
Target:  5'- -cGCCgUCGCCAGgGCAaGGCUGguGg -3'
miRNA:   3'- acCGG-AGCGGUCgUGUgUCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 28983 0.65 0.832694
Target:  5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3'
miRNA:   3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 29129 0.66 0.817934
Target:  5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3'
miRNA:   3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 29461 0.69 0.659722
Target:  5'- aGGUaCUCGUugcgCAGCGaggGCAGCUGCAGg -3'
miRNA:   3'- aCCG-GAGCG----GUCGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 30222 0.68 0.68921
Target:  5'- cGGCCggcCGUUGGCGuCGC-GCUGCAGg -3'
miRNA:   3'- aCCGGa--GCGGUCGU-GUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 30967 0.71 0.513218
Target:  5'- aGGCgCUCGgCAcGCAgcaGCAGCUGCGGa -3'
miRNA:   3'- aCCG-GAGCgGU-CGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 31812 0.66 0.817098
Target:  5'- gGGCUUCGCCGaguggucGCAgAC-GCUGguGg -3'
miRNA:   3'- aCCGGAGCGGU-------CGUgUGuCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 31978 0.66 0.792217
Target:  5'- cGGCgUC-CCAGCACGCGcacauGCUGCc-- -3'
miRNA:   3'- aCCGgAGcGGUCGUGUGU-----CGACGuca -5'
13934 5' -59.7 NC_003521.1 + 32333 0.66 0.792217
Target:  5'- gUGGCCacggGCCAGUACGUGGuCUGUAGUc -3'
miRNA:   3'- -ACCGGag--CGGUCGUGUGUC-GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 33242 0.66 0.817934
Target:  5'- cGGCgUUgaGCUGGCACACGcGCaGCAGg -3'
miRNA:   3'- aCCGgAG--CGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 33513 0.69 0.630047
Target:  5'- cGGCCUgcuggcgugUGCCAGCucaACGcCGGCUGCAa- -3'
miRNA:   3'- aCCGGA---------GCGGUCG---UGU-GUCGACGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.