miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 195616 0.76 0.29398
Target:  5'- cGGCC-CGCCAGCugguCGCGuuGCUGCAGc -3'
miRNA:   3'- aCCGGaGCGGUCGu---GUGU--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 55736 0.71 0.541813
Target:  5'- aGcGCCUC-CCAGCGCGCGgGCgGCAGc -3'
miRNA:   3'- aC-CGGAGcGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 119158 0.71 0.532218
Target:  5'- cGGcCCUCcgaggaaacagGCCGGCGCGCAGCUGgAu- -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUGUCGACgUca -5'
13934 5' -59.7 NC_003521.1 + 102487 0.71 0.532218
Target:  5'- aGGCCcgagaCGCCGuCGCGCAGCcGCAGg -3'
miRNA:   3'- aCCGGa----GCGGUcGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 149485 0.71 0.522684
Target:  5'- cGGCUUCGCCGGacagACGCcGCUGCGc- -3'
miRNA:   3'- aCCGGAGCGGUCg---UGUGuCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 30967 0.71 0.513218
Target:  5'- aGGCgCUCGgCAcGCAgcaGCAGCUGCGGa -3'
miRNA:   3'- aCCG-GAGCgGU-CGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 148783 0.71 0.503823
Target:  5'- cGGUCgCGCCgaggAGC-CGCGGCUGCGGa -3'
miRNA:   3'- aCCGGaGCGG----UCGuGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 49858 0.72 0.485262
Target:  5'- cGGCCUCGuCCAGCAUGCucauGaugGCGGUc -3'
miRNA:   3'- aCCGGAGC-GGUCGUGUGu---Cga-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 226861 0.72 0.476104
Target:  5'- aGGCCcaucagggCGuCCAGCGaggGCAGCUGCGGg -3'
miRNA:   3'- aCCGGa-------GC-GGUCGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 108930 0.72 0.458053
Target:  5'- aUGGCCaUCaUCAGUGCGCGGCUGuCGGUg -3'
miRNA:   3'- -ACCGG-AGcGGUCGUGUGUCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 57145 0.72 0.458053
Target:  5'- aGGUCUCGUCGGC-CACGcGCgGCAGg -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 2738 0.72 0.449165
Target:  5'- -cGCCUCGCUGGCugGCuGCUGCu-- -3'
miRNA:   3'- acCGGAGCGGUCGugUGuCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 84670 0.72 0.449165
Target:  5'- aGGCgUCGCagCAGCGCcaGCAGCUGCGu- -3'
miRNA:   3'- aCCGgAGCG--GUCGUG--UGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 218619 0.73 0.4146
Target:  5'- cGGCC--GCCAGCGCGCGGCgguaaGCGGc -3'
miRNA:   3'- aCCGGagCGGUCGUGUGUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 131472 0.73 0.397942
Target:  5'- cGGCCUCGUCGGCcuccuGCGcCGGCUGCu-- -3'
miRNA:   3'- aCCGGAGCGGUCG-----UGU-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 121211 0.74 0.389775
Target:  5'- cGGUCUCGCgCagGGCGCGCAGCUcCAGg -3'
miRNA:   3'- aCCGGAGCG-G--UCGUGUGUCGAcGUCa -5'
13934 5' -59.7 NC_003521.1 + 153561 0.74 0.358225
Target:  5'- uUGGCCacgCGCaCGGCGCACAGCcgcuccaccaccUGCAGc -3'
miRNA:   3'- -ACCGGa--GCG-GUCGUGUGUCG------------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 234668 0.75 0.321369
Target:  5'- gGaGCCggaGCCGGCGCAuUGGCUGCAGUa -3'
miRNA:   3'- aC-CGGag-CGGUCGUGU-GUCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 168196 0.75 0.314347
Target:  5'- cUGGCC-CGCCAGCACggugauguuguGCAGCUugaGCAGc -3'
miRNA:   3'- -ACCGGaGCGGUCGUG-----------UGUCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 200085 1.06 0.002525
Target:  5'- uUGGCCUCGCCAGCACACAGCUGCAGUc -3'
miRNA:   3'- -ACCGGAGCGGUCGUGUGUCGACGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.