miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 681 1.06 0.002525
Target:  5'- uUGGCCUCGCCAGCACACAGCUGCAGUc -3'
miRNA:   3'- -ACCGGAGCGGUCGUGUGUCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 85663 0.7 0.610258
Target:  5'- aGGCCUgcUGCCGGCcaaGCGCAGCcGCuuGUg -3'
miRNA:   3'- aCCGGA--GCGGUCG---UGUGUCGaCGu-CA- -5'
13934 5' -59.7 NC_003521.1 + 220826 0.69 0.630047
Target:  5'- -aGCCgUCGCCGGUACGCucAGCggagUGCGGUg -3'
miRNA:   3'- acCGG-AGCGGUCGUGUG--UCG----ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 28983 0.65 0.832694
Target:  5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3'
miRNA:   3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 117158 0.72 0.476104
Target:  5'- gGGUCUccCGCCGGCGCGCcGCcGCAGc -3'
miRNA:   3'- aCCGGA--GCGGUCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 215708 0.71 0.513218
Target:  5'- cGGCCUggCGCCAGCACccGCGGCUcuGCu-- -3'
miRNA:   3'- aCCGGA--GCGGUCGUG--UGUCGA--CGuca -5'
13934 5' -59.7 NC_003521.1 + 59048 0.71 0.532217
Target:  5'- aUGcGUCgUCGCCGGCGCGCGccgccCUGCAGUg -3'
miRNA:   3'- -AC-CGG-AGCGGUCGUGUGUc----GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 154913 0.71 0.532217
Target:  5'- cGGCCUCgGCCAGCGgCACGuGCUuGCuGa -3'
miRNA:   3'- aCCGGAG-CGGUCGU-GUGU-CGA-CGuCa -5'
13934 5' -59.7 NC_003521.1 + 150973 0.71 0.551464
Target:  5'- cGGCCgagaGCCAGUcgccgccgGCGCAGCaGCAGc -3'
miRNA:   3'- aCCGGag--CGGUCG--------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 200560 0.7 0.600383
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 164690 0.7 0.570916
Target:  5'- gUGGCgCU-GCUAGCAC-CAGCgGCGGUg -3'
miRNA:   3'- -ACCG-GAgCGGUCGUGuGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 191886 0.71 0.541812
Target:  5'- -cGCUUCGCC-GCGCACAGCaaacaGCAGa -3'
miRNA:   3'- acCGGAGCGGuCGUGUGUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 144478 0.78 0.228108
Target:  5'- aGGCaggCGUCGGCGCACuGCUGCAGc -3'
miRNA:   3'- aCCGga-GCGGUCGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 127027 0.7 0.600383
Target:  5'- gGGCCU-GCCGGacuuCACGucGCUGCAGUu -3'
miRNA:   3'- aCCGGAgCGGUCgu--GUGU--CGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 84954 0.74 0.381718
Target:  5'- cGGCCUggagGUguGCACGCAGCUGCuGg -3'
miRNA:   3'- aCCGGAg---CGguCGUGUGUCGACGuCa -5'
13934 5' -59.7 NC_003521.1 + 142589 0.71 0.536048
Target:  5'- cGGCCUCGCgCAcccaguugcgacgacGCGCGCGGCUgggccgcuGCAGc -3'
miRNA:   3'- aCCGGAGCG-GU---------------CGUGUGUCGA--------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 221205 0.7 0.600383
Target:  5'- cGGCCgCGUCGGCGCugAuccuGCUGCuGUu -3'
miRNA:   3'- aCCGGaGCGGUCGUGugU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 74449 0.7 0.610258
Target:  5'- gGGCCgcgCGCCgGGCGcCGCGGC-GCAGc -3'
miRNA:   3'- aCCGGa--GCGG-UCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 154745 0.72 0.476104
Target:  5'- aGGUCUUGCCGGCGC-CGGCggUGcCGGUg -3'
miRNA:   3'- aCCGGAGCGGUCGUGuGUCG--AC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 105852 0.71 0.513218
Target:  5'- cGGCUgCGCCGGCggcggcgacgACACGGCgGCGGa -3'
miRNA:   3'- aCCGGaGCGGUCG----------UGUGUCGaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.