miRNA display CGI


Results 81 - 100 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 50448 0.66 0.989067
Target:  5'- uCAGCGGUGGACGGAGCcgaaagccGCGugucGGUg -3'
miRNA:   3'- uGUCGCUGCCUGCCUUGu-------UGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 113112 0.66 0.989067
Target:  5'- aGCGGCucuCGGGCcaGGugcGCGACGAUGuGCu -3'
miRNA:   3'- -UGUCGcu-GCCUG--CCu--UGUUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 162772 0.66 0.989067
Target:  5'- cGCAcGCGugGuGgacuGCGuGGACGGCGAaGGCa -3'
miRNA:   3'- -UGU-CGCugC-C----UGC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 147446 0.66 0.989067
Target:  5'- gGCuGCG-CGcGCGGAAgUAGCGgAUGGCg -3'
miRNA:   3'- -UGuCGCuGCcUGCCUU-GUUGC-UACCG- -5'
13935 3' -53.3 NC_003521.1 + 213445 0.66 0.988931
Target:  5'- cCAGCGACGGGCcuugaaGGcgucgcacgucauGACGGCGccGGUg -3'
miRNA:   3'- uGUCGCUGCCUG------CC-------------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 69475 0.66 0.988931
Target:  5'- -gAGCGGCGG-CGGGAgugccgcCGACGucgGGUa -3'
miRNA:   3'- ugUCGCUGCCuGCCUU-------GUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 66855 0.66 0.988518
Target:  5'- gGCAGgGGCGcGuCGGAGCucagacgcacguuGCGcUGGCg -3'
miRNA:   3'- -UGUCgCUGC-CuGCCUUGu------------UGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 119018 0.67 0.987802
Target:  5'- gGCGGCGAacacggauucggauaGGGCGG-GCGGCGucggGGUg -3'
miRNA:   3'- -UGUCGCUg--------------CCUGCCuUGUUGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 85685 0.67 0.987655
Target:  5'- cCGGCGGgGGGCuGGGCAcCGGaGGCc -3'
miRNA:   3'- uGUCGCUgCCUGcCUUGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 91525 0.67 0.987655
Target:  5'- cGCAgauGCGuguccCGGACGGGACccCGAgGGCc -3'
miRNA:   3'- -UGU---CGCu----GCCUGCCUUGuuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 112073 0.67 0.987655
Target:  5'- --cGCcGCGGugGGGAUcaggGGCGGcUGGCg -3'
miRNA:   3'- uguCGcUGCCugCCUUG----UUGCU-ACCG- -5'
13935 3' -53.3 NC_003521.1 + 113216 0.67 0.987655
Target:  5'- gUAGCGcaucuCGGGCGGGuc-GCGGUaGGCg -3'
miRNA:   3'- uGUCGCu----GCCUGCCUuguUGCUA-CCG- -5'
13935 3' -53.3 NC_003521.1 + 17776 0.67 0.987655
Target:  5'- cCGGCGGCGGACGGucaGGUGAaGGa -3'
miRNA:   3'- uGUCGCUGCCUGCCuugUUGCUaCCg -5'
13935 3' -53.3 NC_003521.1 + 105417 0.67 0.987655
Target:  5'- gACGGCGAUggGGAUGGGGCAA-GA-GGa -3'
miRNA:   3'- -UGUCGCUG--CCUGCCUUGUUgCUaCCg -5'
13935 3' -53.3 NC_003521.1 + 99617 0.67 0.987655
Target:  5'- uGCAGCGcCcGGCGGcGCAGCGccacGGCc -3'
miRNA:   3'- -UGUCGCuGcCUGCCuUGUUGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 141888 0.67 0.987655
Target:  5'- uCGGUGACGGccGCGGcgcaguccugGAUGACGAUagGGCu -3'
miRNA:   3'- uGUCGCUGCC--UGCC----------UUGUUGCUA--CCG- -5'
13935 3' -53.3 NC_003521.1 + 101182 0.67 0.986743
Target:  5'- gACGGCGuccgcgcccgGCGGGCGGAucuugaccgagauguGC-ACGuuuuUGGCg -3'
miRNA:   3'- -UGUCGC----------UGCCUGCCU---------------UGuUGCu---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 43594 0.67 0.986106
Target:  5'- -gGGCGGC-GACGaGGACGACGAgcGCg -3'
miRNA:   3'- ugUCGCUGcCUGC-CUUGUUGCUacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.