Results 61 - 80 of 434 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 3' | -53.3 | NC_003521.1 | + | 239203 | 0.66 | 0.990349 |
Target: 5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3' miRNA: 3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 46431 | 0.66 | 0.990349 |
Target: 5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3' miRNA: 3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 123184 | 0.66 | 0.990349 |
Target: 5'- cGCGGCGcagucGCaGGCGGAACGACaccgGGUc -3' miRNA: 3'- -UGUCGC-----UGcCUGCCUUGUUGcua-CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 146659 | 0.66 | 0.990349 |
Target: 5'- gACGGCGAggaGGACGGcAACGAagcCGAccGCa -3' miRNA: 3'- -UGUCGCUg--CCUGCC-UUGUU---GCUacCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 217332 | 0.66 | 0.990349 |
Target: 5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3' miRNA: 3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 202112 | 0.66 | 0.990349 |
Target: 5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3' miRNA: 3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 163918 | 0.66 | 0.990349 |
Target: 5'- gGguGCGGCGGcaGCGG--CAACGAaagaGGCg -3' miRNA: 3'- -UguCGCUGCC--UGCCuuGUUGCUa---CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 110418 | 0.66 | 0.990349 |
Target: 5'- uCAGCGugaGCGuGAgaaCGGAGCGGCGGuuguUGGUg -3' miRNA: 3'- uGUCGC---UGC-CU---GCCUUGUUGCU----ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 132427 | 0.66 | 0.990349 |
Target: 5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3' miRNA: 3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 103056 | 0.66 | 0.990349 |
Target: 5'- uGCuGCaGACaGGGCGGGu--GCGcgGGCg -3' miRNA: 3'- -UGuCG-CUG-CCUGCCUuguUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 115682 | 0.66 | 0.990349 |
Target: 5'- -aGGCGGCcaGGCGGAACAGcCGGUGu- -3' miRNA: 3'- ugUCGCUGc-CUGCCUUGUU-GCUACcg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 174490 | 0.66 | 0.990349 |
Target: 5'- aACAcUGAUGGAaGGAcuGCAgggccGCGAUGGCc -3' miRNA: 3'- -UGUcGCUGCCUgCCU--UGU-----UGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 88475 | 0.66 | 0.990227 |
Target: 5'- uGCAGCGAguugaagagggUGGGCGGGuagagcggcacgcGCAGCGAcucGCa -3' miRNA: 3'- -UGUCGCU-----------GCCUGCCU-------------UGUUGCUac-CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 50448 | 0.66 | 0.989067 |
Target: 5'- uCAGCGGUGGACGGAGCcgaaagccGCGugucGGUg -3' miRNA: 3'- uGUCGCUGCCUGCCUUGu-------UGCua--CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 147446 | 0.66 | 0.989067 |
Target: 5'- gGCuGCG-CGcGCGGAAgUAGCGgAUGGCg -3' miRNA: 3'- -UGuCGCuGCcUGCCUU-GUUGC-UACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 80772 | 0.66 | 0.989067 |
Target: 5'- cACGGCcauCGGAgcCGuGGGCGgcGCGGUGGCc -3' miRNA: 3'- -UGUCGcu-GCCU--GC-CUUGU--UGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 160485 | 0.66 | 0.989067 |
Target: 5'- -aGGCGAgGaGACGGAcacagcagaccGCGGCGGgaggagggGGCg -3' miRNA: 3'- ugUCGCUgC-CUGCCU-----------UGUUGCUa-------CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 233425 | 0.66 | 0.989067 |
Target: 5'- cACGGCGGC--GCGGA-CAGCGGUGcccaaGCa -3' miRNA: 3'- -UGUCGCUGccUGCCUuGUUGCUAC-----CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 215052 | 0.66 | 0.989067 |
Target: 5'- gGCGGUGAagaGGACGG--CGGCGAgcgGGa -3' miRNA: 3'- -UGUCGCUg--CCUGCCuuGUUGCUa--CCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 162772 | 0.66 | 0.989067 |
Target: 5'- cGCAcGCGugGuGgacuGCGuGGACGGCGAaGGCa -3' miRNA: 3'- -UGU-CGCugC-C----UGC-CUUGUUGCUaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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