miRNA display CGI


Results 61 - 80 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 45921 0.71 0.910405
Target:  5'- gAUAGCGGgugugcgcCGGaccccGCGGAgccgGCGGCGGUGGCc -3'
miRNA:   3'- -UGUCGCU--------GCC-----UGCCU----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 46431 0.66 0.990349
Target:  5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3'
miRNA:   3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 47561 0.69 0.954189
Target:  5'- aGCGGggaaGACGGcgaGCGG-GCcACGGUGGCg -3'
miRNA:   3'- -UGUCg---CUGCC---UGCCuUGuUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 47899 0.7 0.937006
Target:  5'- -gAGCGGCGGAgCGuGAAgaAGCGAgaggGGCa -3'
miRNA:   3'- ugUCGCUGCCU-GC-CUUg-UUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 48270 0.66 0.992559
Target:  5'- gACGGUGaACGG-CGGuuccAACAACGucacGGCg -3'
miRNA:   3'- -UGUCGC-UGCCuGCC----UUGUUGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 48934 0.67 0.986106
Target:  5'- uCAGCGGCGGGgaGGGAgaAGCGGUG-Ca -3'
miRNA:   3'- uGUCGCUGCCUg-CCUUg-UUGCUACcG- -5'
13935 3' -53.3 NC_003521.1 + 50448 0.66 0.989067
Target:  5'- uCAGCGGUGGACGGAGCcgaaagccGCGugucGGUg -3'
miRNA:   3'- uGUCGCUGCCUGCCUUGu-------UGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 50539 0.76 0.665227
Target:  5'- aGCAGCGGCGGAccCGGcuGCAGCGGcaguacGGCg -3'
miRNA:   3'- -UGUCGCUGCCU--GCCu-UGUUGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 52233 0.7 0.932145
Target:  5'- -gGGCGGCGGGCuacaguuGGGCAGCGGcaGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc------CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 53285 0.66 0.990349
Target:  5'- gACAGCGGCGGcgaccuggguUGGGAguUugUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCu---------GCCUU--GuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 53929 0.7 0.94164
Target:  5'- gGCGGCGGCaGGAgCGGAaGCAACGugcggagacGGCc -3'
miRNA:   3'- -UGUCGCUG-CCU-GCCU-UGUUGCua-------CCG- -5'
13935 3' -53.3 NC_003521.1 + 54040 0.72 0.870345
Target:  5'- uGCGGCuaACGGGCGGGAagggugcCAGCGAgcggagGGCg -3'
miRNA:   3'- -UGUCGc-UGCCUGCCUU-------GUUGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 54324 0.77 0.615138
Target:  5'- uCGGCGGCaucGGCGGAgGCGGCGGUGGUg -3'
miRNA:   3'- uGUCGCUGc--CUGCCU-UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 54463 0.79 0.510928
Target:  5'- cGCGGCGGCGGugGuGGcgGCAagucgacgucgcgcgGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugC-CU--UGU---------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 54929 0.67 0.982567
Target:  5'- cCGGCGugGG-CaGAAaaguGACGGUGGUg -3'
miRNA:   3'- uGUCGCugCCuGcCUUg---UUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 55177 0.72 0.871066
Target:  5'- -gGGCG-CGGACGcugaaacacGAcCGGCGAUGGCa -3'
miRNA:   3'- ugUCGCuGCCUGC---------CUuGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 55744 0.73 0.824371
Target:  5'- cCAGCGcGCGGGCGGcAGCGACa--GGCg -3'
miRNA:   3'- uGUCGC-UGCCUGCC-UUGUUGcuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 55939 0.66 0.991511
Target:  5'- cCAGUuccucuCGGugGGGcccgACGACGAggUGGCg -3'
miRNA:   3'- uGUCGcu----GCCugCCU----UGUUGCU--ACCG- -5'
13935 3' -53.3 NC_003521.1 + 56125 0.67 0.984413
Target:  5'- --cGCGGCGGuGCGGGcCAGCG-UGGa -3'
miRNA:   3'- uguCGCUGCC-UGCCUuGUUGCuACCg -5'
13935 3' -53.3 NC_003521.1 + 57300 0.68 0.967885
Target:  5'- cGCGGCGACuGG-UGGAuaAGCGAgGGCc -3'
miRNA:   3'- -UGUCGCUG-CCuGCCUugUUGCUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.