miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 36002 0.71 0.916183
Target:  5'- uCAGCGACGGcgACGGA-----GGUGGCg -3'
miRNA:   3'- uGUCGCUGCC--UGCCUuguugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 36311 0.71 0.89817
Target:  5'- uCGGCGGCGGGCuu-ACGGCGAagagGGCc -3'
miRNA:   3'- uGUCGCUGCCUGccuUGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 36367 0.7 0.937006
Target:  5'- cACGGCGG-GGAgGGuGGCGAgGGUGGUg -3'
miRNA:   3'- -UGUCGCUgCCUgCC-UUGUUgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 37354 0.66 0.993502
Target:  5'- uGCAGaCGACGGAgCGcuGCuucuUGGUGGCc -3'
miRNA:   3'- -UGUC-GCUGCCU-GCcuUGuu--GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 37756 0.76 0.685138
Target:  5'- uACAGCGugGcGAUGGGggugcccugcgGCAccACGGUGGCc -3'
miRNA:   3'- -UGUCGCugC-CUGCCU-----------UGU--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 38149 0.69 0.964774
Target:  5'- cCGGCGugGGugGGuuucagaGACGGUuGCg -3'
miRNA:   3'- uGUCGCugCCugCCuug----UUGCUAcCG- -5'
13935 3' -53.3 NC_003521.1 + 38199 0.69 0.964774
Target:  5'- -aGGCGAC-GAUGuAGCgGACGAUGGCg -3'
miRNA:   3'- ugUCGCUGcCUGCcUUG-UUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 39873 0.67 0.982567
Target:  5'- gACGGCGAuCGGGCGccguACAGgGuguUGGCc -3'
miRNA:   3'- -UGUCGCU-GCCUGCcu--UGUUgCu--ACCG- -5'
13935 3' -53.3 NC_003521.1 + 40045 0.67 0.984236
Target:  5'- aGCAGCGACuggaccuGGACuacgagccccuGGAACAgagACGGaggGGCg -3'
miRNA:   3'- -UGUCGCUG-------CCUG-----------CCUUGU---UGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 41614 0.71 0.910405
Target:  5'- aGguGCGACGGugGaugacgcGAUAGCGAUcGGCg -3'
miRNA:   3'- -UguCGCUGCCugCc------UUGUUGCUA-CCG- -5'
13935 3' -53.3 NC_003521.1 + 42715 0.71 0.910405
Target:  5'- gUAGCGcCGGACGGcguuguggcgGGCGGCGAcuccGGCg -3'
miRNA:   3'- uGUCGCuGCCUGCC----------UUGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 42878 0.69 0.961458
Target:  5'- gGCGGCGACGG-CGccgccGGCGGCcGUGGUa -3'
miRNA:   3'- -UGUCGCUGCCuGCc----UUGUUGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 43444 0.69 0.950229
Target:  5'- gGCGGCGGCGGcccUGGAacucucACAGCGGgccagcgcGGCg -3'
miRNA:   3'- -UGUCGCUGCCu--GCCU------UGUUGCUa-------CCG- -5'
13935 3' -53.3 NC_003521.1 + 43513 0.66 0.991511
Target:  5'- gAUGGCGaugagGCGGAUGGAGCGcgcccaauguGCGGcgucUGGUg -3'
miRNA:   3'- -UGUCGC-----UGCCUGCCUUGU----------UGCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 43594 0.67 0.986106
Target:  5'- -gGGCGGC-GACGaGGACGACGAgcGCg -3'
miRNA:   3'- ugUCGCUGcCUGC-CUUGUUGCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 43810 0.7 0.922275
Target:  5'- cCGGCGGCGGggaGCGGGAgGGCGGcucgacgggagagggGGCg -3'
miRNA:   3'- uGUCGCUGCC---UGCCUUgUUGCUa--------------CCG- -5'
13935 3' -53.3 NC_003521.1 + 44084 0.67 0.984413
Target:  5'- cCGGCGGCGGcugaccCGGcugcuGCGAC-AUGGCg -3'
miRNA:   3'- uGUCGCUGCCu-----GCCu----UGUUGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 44913 0.68 0.970796
Target:  5'- cGCGGCGGCGaggacgaaGACGaGGACGACGAagaGGa -3'
miRNA:   3'- -UGUCGCUGC--------CUGC-CUUGUUGCUa--CCg -5'
13935 3' -53.3 NC_003521.1 + 45050 0.67 0.984236
Target:  5'- uGCAGCaGGuuguagagcacCGGGCGGAAggcCGGCGAgguggacUGGCg -3'
miRNA:   3'- -UGUCG-CU-----------GCCUGCCUU---GUUGCU-------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 45711 0.71 0.910405
Target:  5'- cGCGGCGACGauGACGaGGacccccGCGACGGacUGGCc -3'
miRNA:   3'- -UGUCGCUGC--CUGC-CU------UGUUGCU--ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.