miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 115682 0.66 0.990349
Target:  5'- -aGGCGGCcaGGCGGAACAGcCGGUGu- -3'
miRNA:   3'- ugUCGCUGc-CUGCCUUGUU-GCUACcg -5'
13935 3' -53.3 NC_003521.1 + 90972 0.66 0.991511
Target:  5'- uCGGCGugGuuuAUGGGAUGGCGAcgguuaccUGGCa -3'
miRNA:   3'- uGUCGCugCc--UGCCUUGUUGCU--------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 162772 0.66 0.989067
Target:  5'- cGCAcGCGugGuGgacuGCGuGGACGGCGAaGGCa -3'
miRNA:   3'- -UGU-CGCugC-C----UGC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 113112 0.66 0.989067
Target:  5'- aGCGGCucuCGGGCcaGGugcGCGACGAUGuGCu -3'
miRNA:   3'- -UGUCGcu-GCCUG--CCu--UGUUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 167690 0.66 0.991175
Target:  5'- uGCGGUGACGacgcucguggaggaGGCGGcgguAGCAGCGGuagUGGUa -3'
miRNA:   3'- -UGUCGCUGC--------------CUGCC----UUGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 46431 0.66 0.990349
Target:  5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3'
miRNA:   3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 110418 0.66 0.990349
Target:  5'- uCAGCGugaGCGuGAgaaCGGAGCGGCGGuuguUGGUg -3'
miRNA:   3'- uGUCGC---UGC-CU---GCCUUGUUGCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 236624 0.66 0.989067
Target:  5'- uGCGGCuGACGGuCuGGGCGGCGAUccaGCa -3'
miRNA:   3'- -UGUCG-CUGCCuGcCUUGUUGCUAc--CG- -5'
13935 3' -53.3 NC_003521.1 + 103806 0.66 0.992559
Target:  5'- cCGGCGAgaugacCGuGCGGAACA--GGUGGCu -3'
miRNA:   3'- uGUCGCU------GCcUGCCUUGUugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 233425 0.66 0.989067
Target:  5'- cACGGCGGC--GCGGA-CAGCGGUGcccaaGCa -3'
miRNA:   3'- -UGUCGCUGccUGCCUuGUUGCUAC-----CG- -5'
13935 3' -53.3 NC_003521.1 + 222767 0.66 0.994346
Target:  5'- cACGGCGuCGGugGGGuCGGCGcagaGGa -3'
miRNA:   3'- -UGUCGCuGCCugCCUuGUUGCua--CCg -5'
13935 3' -53.3 NC_003521.1 + 119800 0.66 0.994346
Target:  5'- cCGGCG-CcaGCGGGGCGacACGGUGGUg -3'
miRNA:   3'- uGUCGCuGccUGCCUUGU--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 106647 0.66 0.994346
Target:  5'- cCGaCGACGGA-GGAgGCGGCGGagaUGGCg -3'
miRNA:   3'- uGUcGCUGCCUgCCU-UGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 217268 0.66 0.992559
Target:  5'- ---aUGACGGACgaGGAGCAGgCGcUGGCc -3'
miRNA:   3'- ugucGCUGCCUG--CCUUGUU-GCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 217332 0.66 0.990349
Target:  5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3'
miRNA:   3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 132427 0.66 0.990349
Target:  5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3'
miRNA:   3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 146659 0.66 0.990349
Target:  5'- gACGGCGAggaGGACGGcAACGAagcCGAccGCa -3'
miRNA:   3'- -UGUCGCUg--CCUGCC-UUGUU---GCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 160485 0.66 0.989067
Target:  5'- -aGGCGAgGaGACGGAcacagcagaccGCGGCGGgaggagggGGCg -3'
miRNA:   3'- ugUCGCUgC-CUGCCU-----------UGUUGCUa-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.