miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 213445 0.66 0.988931
Target:  5'- cCAGCGACGGGCcuugaaGGcgucgcacgucauGACGGCGccGGUg -3'
miRNA:   3'- uGUCGCUGCCUG------CC-------------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 138687 0.66 0.991175
Target:  5'- cCGGCGACaaggccgugagccuGGGCGGcACgGGCGcUGGCu -3'
miRNA:   3'- uGUCGCUG--------------CCUGCCuUG-UUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 240127 0.66 0.992559
Target:  5'- uGCGGUcgucccGGCGGGCGcGGAaAGCGcUGGCu -3'
miRNA:   3'- -UGUCG------CUGCCUGC-CUUgUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 103056 0.66 0.990349
Target:  5'- uGCuGCaGACaGGGCGGGu--GCGcgGGCg -3'
miRNA:   3'- -UGuCG-CUG-CCUGCCUuguUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 32963 0.66 0.991511
Target:  5'- aACGGCG-CGGAcaaCGGAACcagAAgGAgcccUGGCg -3'
miRNA:   3'- -UGUCGCuGCCU---GCCUUG---UUgCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 46431 0.66 0.990349
Target:  5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3'
miRNA:   3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 50448 0.66 0.989067
Target:  5'- uCAGCGGUGGACGGAGCcgaaagccGCGugucGGUg -3'
miRNA:   3'- uGUCGCUGCCUGCCUUGu-------UGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 160485 0.66 0.989067
Target:  5'- -aGGCGAgGaGACGGAcacagcagaccGCGGCGGgaggagggGGCg -3'
miRNA:   3'- ugUCGCUgC-CUGCCU-----------UGUUGCUa-------CCG- -5'
13935 3' -53.3 NC_003521.1 + 146659 0.66 0.990349
Target:  5'- gACGGCGAggaGGACGGcAACGAagcCGAccGCa -3'
miRNA:   3'- -UGUCGCUg--CCUGCC-UUGUU---GCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 132427 0.66 0.990349
Target:  5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3'
miRNA:   3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 217332 0.66 0.990349
Target:  5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3'
miRNA:   3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 217268 0.66 0.992559
Target:  5'- ---aUGACGGACgaGGAGCAGgCGcUGGCc -3'
miRNA:   3'- ugucGCUGCCUG--CCUUGUU-GCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 106647 0.66 0.994346
Target:  5'- cCGaCGACGGA-GGAgGCGGCGGagaUGGCg -3'
miRNA:   3'- uGUcGCUGCCUgCCU-UGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 119800 0.66 0.994346
Target:  5'- cCGGCG-CcaGCGGGGCGacACGGUGGUg -3'
miRNA:   3'- uGUCGCuGccUGCCUUGU--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 86210 0.66 0.994346
Target:  5'- -aGGCGAaGGGCGGcGGC-ACGccGGCg -3'
miRNA:   3'- ugUCGCUgCCUGCC-UUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 233425 0.66 0.989067
Target:  5'- cACGGCGGC--GCGGA-CAGCGGUGcccaaGCa -3'
miRNA:   3'- -UGUCGCUGccUGCCUuGUUGCUAC-----CG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 102046 0.66 0.992559
Target:  5'- cGCAGC-ACGGcCGGGuugaGCAcuACGGuguUGGCg -3'
miRNA:   3'- -UGUCGcUGCCuGCCU----UGU--UGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 236624 0.66 0.989067
Target:  5'- uGCGGCuGACGGuCuGGGCGGCGAUccaGCa -3'
miRNA:   3'- -UGUCG-CUGCCuGcCUUGUUGCUAc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.