miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 143096 0.66 0.9914
Target:  5'- cGCAGCcGCcgccggaGGAUGaGGACGACGAgucGGCc -3'
miRNA:   3'- -UGUCGcUG-------CCUGC-CUUGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 213306 0.66 0.992559
Target:  5'- -aGGUGACGGACaucauGAugAagAgGAUGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc----CUugU--UgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 102046 0.66 0.992559
Target:  5'- cGCAGC-ACGGcCGGGuugaGCAcuACGGuguUGGCg -3'
miRNA:   3'- -UGUCGcUGCCuGCCU----UGU--UGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 167690 0.66 0.991175
Target:  5'- uGCGGUGACGacgcucguggaggaGGCGGcgguAGCAGCGGuagUGGUa -3'
miRNA:   3'- -UGUCGCUGC--------------CUGCC----UUGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 32963 0.66 0.991511
Target:  5'- aACGGCG-CGGAcaaCGGAACcagAAgGAgcccUGGCg -3'
miRNA:   3'- -UGUCGCuGCCU---GCCUUG---UUgCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 125217 0.66 0.990828
Target:  5'- -uGGCGGCGGcaacGCGGGagaaaaagaaacgacGCGcACGggGGCg -3'
miRNA:   3'- ugUCGCUGCC----UGCCU---------------UGU-UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 24326 0.66 0.991288
Target:  5'- cACAGCGACGauccgaugaaucggcGGCGGGACcuGAaggugcuggugaugcUGAUGGUa -3'
miRNA:   3'- -UGUCGCUGC---------------CUGCCUUG--UU---------------GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 132427 0.66 0.990349
Target:  5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3'
miRNA:   3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 202112 0.66 0.990349
Target:  5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3'
miRNA:   3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 103806 0.66 0.992559
Target:  5'- cCGGCGAgaugacCGuGCGGAACA--GGUGGCu -3'
miRNA:   3'- uGUCGCU------GCcUGCCUUGUugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 179662 0.66 0.992559
Target:  5'- cACAGgGAagaauaUGGACGuGggUggUGGUGGUu -3'
miRNA:   3'- -UGUCgCU------GCCUGC-CuuGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 163918 0.66 0.990349
Target:  5'- gGguGCGGCGGcaGCGG--CAACGAaagaGGCg -3'
miRNA:   3'- -UguCGCUGCC--UGCCuuGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 146788 0.66 0.9914
Target:  5'- uGCAGgaGACGGACGaugauccggaccuGGACGACGAgcGCu -3'
miRNA:   3'- -UGUCg-CUGCCUGC-------------CUUGUUGCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 113112 0.66 0.989067
Target:  5'- aGCGGCucuCGGGCcaGGugcGCGACGAUGuGCu -3'
miRNA:   3'- -UGUCGcu-GCCUG--CCu--UGUUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 88475 0.66 0.990227
Target:  5'- uGCAGCGAguugaagagggUGGGCGGGuagagcggcacgcGCAGCGAcucGCa -3'
miRNA:   3'- -UGUCGCU-----------GCCUGCCU-------------UGUUGCUac-CG- -5'
13935 3' -53.3 NC_003521.1 + 66962 0.66 0.992559
Target:  5'- cGCuGCGGCaGGACGaGcGCAGCc-UGGCa -3'
miRNA:   3'- -UGuCGCUG-CCUGC-CuUGUUGcuACCG- -5'
13935 3' -53.3 NC_003521.1 + 192646 0.66 0.992559
Target:  5'- --cGCGACGG-CGGGAacuCGGgcuugGGCg -3'
miRNA:   3'- uguCGCUGCCuGCCUUguuGCUa----CCG- -5'
13935 3' -53.3 NC_003521.1 + 240127 0.66 0.992559
Target:  5'- uGCGGUcgucccGGCGGGCGcGGAaAGCGcUGGCu -3'
miRNA:   3'- -UGUCG------CUGCCUGC-CUUgUUGCuACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.