miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 240127 0.66 0.992559
Target:  5'- uGCGGUcgucccGGCGGGCGcGGAaAGCGcUGGCu -3'
miRNA:   3'- -UGUCG------CUGCCUGC-CUUgUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 143050 0.66 0.992459
Target:  5'- --cGCGACcuGGAUGGuggugguGGCGcCGGUGGCg -3'
miRNA:   3'- uguCGCUG--CCUGCC-------UUGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 167690 0.66 0.991175
Target:  5'- uGCGGUGACGacgcucguggaggaGGCGGcgguAGCAGCGGuagUGGUa -3'
miRNA:   3'- -UGUCGCUGC--------------CUGCC----UUGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 160485 0.66 0.989067
Target:  5'- -aGGCGAgGaGACGGAcacagcagaccGCGGCGGgaggagggGGCg -3'
miRNA:   3'- ugUCGCUgC-CUGCCU-----------UGUUGCUa-------CCG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 125217 0.66 0.990828
Target:  5'- -uGGCGGCGGcaacGCGGGagaaaaagaaacgacGCGcACGggGGCg -3'
miRNA:   3'- ugUCGCUGCC----UGCCU---------------UGU-UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 143096 0.66 0.9914
Target:  5'- cGCAGCcGCcgccggaGGAUGaGGACGACGAgucGGCc -3'
miRNA:   3'- -UGUCGcUG-------CCUGC-CUUGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 66962 0.66 0.992559
Target:  5'- cGCuGCGGCaGGACGaGcGCAGCc-UGGCa -3'
miRNA:   3'- -UGuCGCUG-CCUGC-CuUGUUGcuACCG- -5'
13935 3' -53.3 NC_003521.1 + 179662 0.66 0.992559
Target:  5'- cACAGgGAagaauaUGGACGuGggUggUGGUGGUu -3'
miRNA:   3'- -UGUCgCU------GCCUGC-CuuGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 123184 0.66 0.990349
Target:  5'- cGCGGCGcagucGCaGGCGGAACGACaccgGGUc -3'
miRNA:   3'- -UGUCGC-----UGcCUGCCUUGUUGcua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 90972 0.66 0.991511
Target:  5'- uCGGCGugGuuuAUGGGAUGGCGAcgguuaccUGGCa -3'
miRNA:   3'- uGUCGCugCc--UGCCUUGUUGCU--------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 147446 0.66 0.989067
Target:  5'- gGCuGCG-CGcGCGGAAgUAGCGgAUGGCg -3'
miRNA:   3'- -UGuCGCuGCcUGCCUU-GUUGC-UACCG- -5'
13935 3' -53.3 NC_003521.1 + 106647 0.66 0.994346
Target:  5'- cCGaCGACGGA-GGAgGCGGCGGagaUGGCg -3'
miRNA:   3'- uGUcGCUGCCUgCCU-UGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 103806 0.66 0.992559
Target:  5'- cCGGCGAgaugacCGuGCGGAACA--GGUGGCu -3'
miRNA:   3'- uGUCGCU------GCcUGCCUUGUugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 88475 0.66 0.990227
Target:  5'- uGCAGCGAguugaagagggUGGGCGGGuagagcggcacgcGCAGCGAcucGCa -3'
miRNA:   3'- -UGUCGCU-----------GCCUGCCU-------------UGUUGCUac-CG- -5'
13935 3' -53.3 NC_003521.1 + 164370 0.66 0.991511
Target:  5'- cACAGCGACcuccagcGACGGuaaccccaacGACAACGGUcGCc -3'
miRNA:   3'- -UGUCGCUGc------CUGCC----------UUGUUGCUAcCG- -5'
13935 3' -53.3 NC_003521.1 + 217332 0.66 0.990349
Target:  5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3'
miRNA:   3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 120498 0.66 0.991511
Target:  5'- -aGGCG-CGuGugGgGGACGACG-UGGCu -3'
miRNA:   3'- ugUCGCuGC-CugC-CUUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 213306 0.66 0.992559
Target:  5'- -aGGUGACGGACaucauGAugAagAgGAUGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc----CUugU--UgCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.