miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 209554 0.76 0.6752
Target:  5'- cCGGCGG-GGugGcGGCGACGGUGGCg -3'
miRNA:   3'- uGUCGCUgCCugCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 239444 0.88 0.174024
Target:  5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 111188 0.83 0.34393
Target:  5'- gACGGCGccGCGGACGGuggGCuggGCGAUGGCg -3'
miRNA:   3'- -UGUCGC--UGCCUGCCu--UGu--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 196705 0.82 0.359243
Target:  5'- aGCAGCGACGGccgacuucaccgGCGGcGACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC------------UGCC-UUGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 131051 0.82 0.367076
Target:  5'- gGCGGCGGCGGGCcucuGGACG-CGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGc---CUUGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 168439 0.81 0.407969
Target:  5'- cGCGGCGGCGGGCGuGAAgAGCGugauggGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGC-CUUgUUGCua----CCG- -5'
13935 3' -53.3 NC_003521.1 + 100512 0.8 0.460624
Target:  5'- -gGGCGuCGGACGGuGC-ACGGUGGCg -3'
miRNA:   3'- ugUCGCuGCCUGCCuUGuUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 129547 0.8 0.468831
Target:  5'- cGCGGCGGCGcuggcacGGCGGGccCGACGAUGGCu -3'
miRNA:   3'- -UGUCGCUGC-------CUGCCUu-GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 142936 0.8 0.469748
Target:  5'- aGCAGCGGCGGucaGGGuCAGCGggGGCc -3'
miRNA:   3'- -UGUCGCUGCCug-CCUuGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 218693 0.79 0.50712
Target:  5'- gGCGGCGGCGaaGGCGGAggagACGGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGC--CUGCCU----UGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 218436 0.79 0.516662
Target:  5'- gACAGCGGCGGcaccACGGAggACAugGccGGCa -3'
miRNA:   3'- -UGUCGCUGCC----UGCCU--UGUugCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 135806 0.79 0.526276
Target:  5'- aGCAGCGGCGGAgGGAggcgcgGCGACGAacGCu -3'
miRNA:   3'- -UGUCGCUGCCUgCCU------UGUUGCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 91861 0.78 0.545699
Target:  5'- -gGGCGGCGGACcaGGACGGCGgcGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 78147 0.78 0.575239
Target:  5'- aGCGGCGGCGGcCGcGAACGAggcacgauccUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGC-CUUGUU----------GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 30985 0.78 0.585172
Target:  5'- aGCAGCuGCGGAucgggaUGGGGCGACGAcGGCg -3'
miRNA:   3'- -UGUCGcUGCCU------GCCUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 163756 0.77 0.625161
Target:  5'- aACAGCGGCGcucacggcGGCGGcAACAACGGUagcGGCg -3'
miRNA:   3'- -UGUCGCUGC--------CUGCC-UUGUUGCUA---CCG- -5'
13935 3' -53.3 NC_003521.1 + 74573 0.77 0.645214
Target:  5'- -gGGCGGC-GACGGAGCGGCGGcgcGGCg -3'
miRNA:   3'- ugUCGCUGcCUGCCUUGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 18733 0.77 0.645214
Target:  5'- gGCGGCGGCGauCGuGGCGGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCcuGCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 92027 0.76 0.659231
Target:  5'- gGCGGCGGCGGugGGuccggggguccccggGGugccucccgUAGCGAUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugCC---------------UU---------GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 163181 0.76 0.685138
Target:  5'- aACAGCGGCa-GCGGAcACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGccUGCCU-UGuuGCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.