miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 190275 0.77 0.645214
Target:  5'- gGCAGCGGuguccccggUGGugGGAGCggUGAcGGCg -3'
miRNA:   3'- -UGUCGCU---------GCCugCCUUGuuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 142618 0.77 0.615138
Target:  5'- gGCGGCGGCGGcCGcGGCGGCcGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCcUUGUUGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 142450 0.8 0.469748
Target:  5'- gGCGGCGGCGGuaGCGGcguCGACGAcGGCg -3'
miRNA:   3'- -UGUCGCUGCC--UGCCuu-GUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 124407 0.86 0.222057
Target:  5'- gGCAGCGGCGG-CGGAggcaGCGGCGcgGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 205280 0.74 0.771665
Target:  5'- uACGGCGGCguGGGCGaGAACcuGGCGGUGcGCg -3'
miRNA:   3'- -UGUCGCUG--CCUGC-CUUG--UUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 117520 0.76 0.695034
Target:  5'- gACGGCGGUGG-CGGGAUGGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 68755 0.78 0.585172
Target:  5'- --cGCGGCGGACGGGugAGgGgcGGCg -3'
miRNA:   3'- uguCGCUGCCUGCCUugUUgCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 195309 0.87 0.192018
Target:  5'- -aAGCGGCGGACGGGACGACauGGUGGUu -3'
miRNA:   3'- ugUCGCUGCCUGCCUUGUUG--CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 202058 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 201872 0.88 0.174024
Target:  5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 54324 0.77 0.615138
Target:  5'- uCGGCGGCaucGGCGGAgGCGGCGGUGGUg -3'
miRNA:   3'- uGUCGCUGc--CUGCCU-UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 130237 0.76 0.665227
Target:  5'- gGCAGCGACGGugcACGuaGAGCAGCGGcccgcGGCa -3'
miRNA:   3'- -UGUCGCUGCC---UGC--CUUGUUGCUa----CCG- -5'
13935 3' -53.3 NC_003521.1 + 77747 0.78 0.555497
Target:  5'- cUAGCGGCGGuuguaGCGGuAGCAGCGgcGGCg -3'
miRNA:   3'- uGUCGCUGCC-----UGCC-UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 54463 0.79 0.510928
Target:  5'- cGCGGCGGCGGugGuGGcgGCAagucgacgucgcgcgGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugC-CU--UGU---------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 155970 0.82 0.394575
Target:  5'- gGCAGCGGCGGGCGGcacguagccucccucGGCGGCGAUGa- -3'
miRNA:   3'- -UGUCGCUGCCUGCC---------------UUGUUGCUACcg -5'
13935 3' -53.3 NC_003521.1 + 118573 0.86 0.227437
Target:  5'- cGCGGCGGCGGGCaGGccGGCGGCGGUGGUa -3'
miRNA:   3'- -UGUCGCUGCCUG-CC--UUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 223934 0.74 0.798668
Target:  5'- aGCAGCGGCGcGAggccgaGGcGCAGCGcUGGCa -3'
miRNA:   3'- -UGUCGCUGC-CUg-----CCuUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 169219 0.74 0.7898
Target:  5'- aGCAGCGGgaGcGACGGcGACAGCGgcGGCc -3'
miRNA:   3'- -UGUCGCUg-C-CUGCC-UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 194665 0.75 0.743587
Target:  5'- aGCGGCGACGGGCGaagcguauAACAGCGAgucGCg -3'
miRNA:   3'- -UGUCGCUGCCUGCc-------UUGUUGCUac-CG- -5'
13935 3' -53.3 NC_003521.1 + 29374 0.75 0.714666
Target:  5'- cGCAGCGcGCGGAUGGuGCGGCGAaagUGcGCc -3'
miRNA:   3'- -UGUCGC-UGCCUGCCuUGUUGCU---AC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.