Results 41 - 60 of 434 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 3' | -53.3 | NC_003521.1 | + | 59814 | 0.74 | 0.766128 |
Target: 5'- cGCGGCGcCGGACgcgGGAAaggggugcugcgauuCGACGAUGGUg -3' miRNA: 3'- -UGUCGCuGCCUG---CCUU---------------GUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 68755 | 0.78 | 0.585172 |
Target: 5'- --cGCGGCGGACGGGugAGgGgcGGCg -3' miRNA: 3'- uguCGCUGCCUGCCUugUUgCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 195309 | 0.87 | 0.192018 |
Target: 5'- -aAGCGGCGGACGGGACGACauGGUGGUu -3' miRNA: 3'- ugUCGCUGCCUGCCUUGUUG--CUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 79819 | 0.75 | 0.743587 |
Target: 5'- aGCAGCGACGG-CGGcaacaguagcAGCAGCGAgGGa -3' miRNA: 3'- -UGUCGCUGCCuGCC----------UUGUUGCUaCCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 201872 | 0.88 | 0.174024 |
Target: 5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3' miRNA: 3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 201277 | 0.72 | 0.863764 |
Target: 5'- -gGGCGcCGGGCGGuccucCGcCGAUGGCg -3' miRNA: 3'- ugUCGCuGCCUGCCuu---GUuGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 118573 | 0.86 | 0.227437 |
Target: 5'- cGCGGCGGCGGGCaGGccGGCGGCGGUGGUa -3' miRNA: 3'- -UGUCGCUGCCUG-CC--UUGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 69433 | 0.72 | 0.848566 |
Target: 5'- cGCcGCGGCGGGCgucgGGAGCGuCGgcGGCa -3' miRNA: 3'- -UGuCGCUGCCUG----CCUUGUuGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 33160 | 0.73 | 0.84068 |
Target: 5'- -gGGCGGCGGgcACGGcggcagcaccGGCGGCGcgGGCg -3' miRNA: 3'- ugUCGCUGCC--UGCC----------UUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 144242 | 0.73 | 0.824371 |
Target: 5'- uGCAGCGGCaugGGGCGGAAgGcCgGGUGGUa -3' miRNA: 3'- -UGUCGCUG---CCUGCCUUgUuG-CUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 117377 | 0.73 | 0.815961 |
Target: 5'- -aGGCGGCGG-CuGAGCGGCGGaGGCg -3' miRNA: 3'- ugUCGCUGCCuGcCUUGUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 223934 | 0.74 | 0.798668 |
Target: 5'- aGCAGCGGCGcGAggccgaGGcGCAGCGcUGGCa -3' miRNA: 3'- -UGUCGCUGC-CUg-----CCuUGUUGCuACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 169219 | 0.74 | 0.7898 |
Target: 5'- aGCAGCGGgaGcGACGGcGACAGCGgcGGCc -3' miRNA: 3'- -UGUCGCUg-C-CUGCC-UUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 233518 | 0.75 | 0.722448 |
Target: 5'- aGCAGCGugGGuACGGugacgagugacguAGCAugacgcaagcuguACGGUGGCg -3' miRNA: 3'- -UGUCGCugCC-UGCC-------------UUGU-------------UGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 202058 | 0.76 | 0.695034 |
Target: 5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3' miRNA: 3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 190275 | 0.77 | 0.645214 |
Target: 5'- gGCAGCGGuguccccggUGGugGGAGCggUGAcGGCg -3' miRNA: 3'- -UGUCGCU---------GCCugCCUUGuuGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 142618 | 0.77 | 0.615138 |
Target: 5'- gGCGGCGGCGGcCGcGGCGGCcGUGGCg -3' miRNA: 3'- -UGUCGCUGCCuGCcUUGUUGcUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 77747 | 0.78 | 0.555497 |
Target: 5'- cUAGCGGCGGuuguaGCGGuAGCAGCGgcGGCg -3' miRNA: 3'- uGUCGCUGCC-----UGCC-UUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 54463 | 0.79 | 0.510928 |
Target: 5'- cGCGGCGGCGGugGuGGcgGCAagucgacgucgcgcgGCGGUGGCg -3' miRNA: 3'- -UGUCGCUGCCugC-CU--UGU---------------UGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 155970 | 0.82 | 0.394575 |
Target: 5'- gGCAGCGGCGGGCGGcacguagccucccucGGCGGCGAUGa- -3' miRNA: 3'- -UGUCGCUGCCUGCC---------------UUGUUGCUACcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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