miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 168439 0.81 0.407969
Target:  5'- cGCGGCGGCGGGCGuGAAgAGCGugauggGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGC-CUUgUUGCua----CCG- -5'
13935 3' -53.3 NC_003521.1 + 131051 0.82 0.367076
Target:  5'- gGCGGCGGCGGGCcucuGGACG-CGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGc---CUUGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 196705 0.82 0.359243
Target:  5'- aGCAGCGACGGccgacuucaccgGCGGcGACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC------------UGCC-UUGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 111188 0.83 0.34393
Target:  5'- gACGGCGccGCGGACGGuggGCuggGCGAUGGCg -3'
miRNA:   3'- -UGUCGC--UGCCUGCCu--UGu--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 145868 0.84 0.300852
Target:  5'- cCGGCGGCGGGCGGcgccGACGACGA-GGCc -3'
miRNA:   3'- uGUCGCUGCCUGCC----UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 30985 0.78 0.585172
Target:  5'- aGCAGCuGCGGAucgggaUGGGGCGACGAcGGCg -3'
miRNA:   3'- -UGUCGcUGCCU------GCCUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 163756 0.77 0.625161
Target:  5'- aACAGCGGCGcucacggcGGCGGcAACAACGGUagcGGCg -3'
miRNA:   3'- -UGUCGCUGC--------CUGCC-UUGUUGCUA---CCG- -5'
13935 3' -53.3 NC_003521.1 + 168496 0.74 0.771665
Target:  5'- -gGGCGGCGaGACGGAggcggaggACGGCGAcgccagcaggcUGGCg -3'
miRNA:   3'- ugUCGCUGC-CUGCCU--------UGUUGCU-----------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 28254 0.75 0.743587
Target:  5'- gACGGCGcCGaGA-GGAACAGCGgcGGCg -3'
miRNA:   3'- -UGUCGCuGC-CUgCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 168547 0.75 0.734028
Target:  5'- cGCGGCGGCGGcgcugGCGGGcuGCGGguaaGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC-----UGCCU--UGUUg---CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 91946 0.75 0.734028
Target:  5'- cCGGCGGCGGACcccguGGCGGCGAgGGCg -3'
miRNA:   3'- uGUCGCUGCCUGcc---UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 212862 0.75 0.701932
Target:  5'- gGCAGCGGuauggucgucgucgUGGACGcGGGCGACGggGGUg -3'
miRNA:   3'- -UGUCGCU--------------GCCUGC-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 239258 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 111384 0.76 0.695034
Target:  5'- aGCGGCGACGGAgGGGAC-GCGcugcagcGGCu -3'
miRNA:   3'- -UGUCGCUGCCUgCCUUGuUGCua-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 74805 0.76 0.685138
Target:  5'- aGCGGCGagacGCGGACGGAcgGCGccgagcGCGAcGGCg -3'
miRNA:   3'- -UGUCGC----UGCCUGCCU--UGU------UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 163181 0.76 0.685138
Target:  5'- aACAGCGGCa-GCGGAcACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGccUGCCU-UGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 209554 0.76 0.6752
Target:  5'- cCGGCGG-GGugGcGGCGACGGUGGCg -3'
miRNA:   3'- uGUCGCUgCCugCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 92027 0.76 0.659231
Target:  5'- gGCGGCGGCGGugGGuccggggguccccggGGugccucccgUAGCGAUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugCC---------------UU---------GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 18733 0.77 0.645214
Target:  5'- gGCGGCGGCGauCGuGGCGGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCcuGCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 74573 0.77 0.645214
Target:  5'- -gGGCGGC-GACGGAGCGGCGGcgcGGCg -3'
miRNA:   3'- ugUCGCUGcCUGCCUUGUUGCUa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.