miRNA display CGI


Results 61 - 80 of 434 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 209554 0.76 0.6752
Target:  5'- cCGGCGG-GGugGcGGCGACGGUGGCg -3'
miRNA:   3'- uGUCGCUgCCugCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 163181 0.76 0.685138
Target:  5'- aACAGCGGCa-GCGGAcACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGccUGCCU-UGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 197483 0.74 0.798668
Target:  5'- cACGcGCGGCGGGCcGGACGGCGcgGaGCa -3'
miRNA:   3'- -UGU-CGCUGCCUGcCUUGUUGCuaC-CG- -5'
13935 3' -53.3 NC_003521.1 + 224014 0.73 0.807391
Target:  5'- gGCAGCGGCGGGCccGGCGGuCGGggcgGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGccUUGUU-GCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 32358 0.73 0.815961
Target:  5'- -gAGcCGGCgGGACGGGGCuuuUGGUGGCg -3'
miRNA:   3'- ugUC-GCUG-CCUGCCUUGuu-GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 113578 0.73 0.815961
Target:  5'- cGCGGUGGggcUGGGCcucgGGGGCAACGggGGCg -3'
miRNA:   3'- -UGUCGCU---GCCUG----CCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 151260 0.73 0.815961
Target:  5'- gACGGCGACGacgaGGAgcGCGACGAgugGGCc -3'
miRNA:   3'- -UGUCGCUGCcug-CCU--UGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 229307 0.73 0.815961
Target:  5'- cGCAuGuCGACGGugcGCGGAGCGACuguUGGCa -3'
miRNA:   3'- -UGU-C-GCUGCC---UGCCUUGUUGcu-ACCG- -5'
13935 3' -53.3 NC_003521.1 + 218082 0.73 0.823537
Target:  5'- cACAGCGAgGcGGCGGcgccgguGACGAUGAgGGCg -3'
miRNA:   3'- -UGUCGCUgC-CUGCC-------UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 168375 0.73 0.824371
Target:  5'- gGCAGuCGGCGGGCaGGAUguaGGUGGCg -3'
miRNA:   3'- -UGUC-GCUGCCUGcCUUGuugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 74695 0.74 0.7898
Target:  5'- aGCAGCGACGG-CGGcGCcGCGGcagcGGCu -3'
miRNA:   3'- -UGUCGCUGCCuGCCuUGuUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 124096 0.74 0.788906
Target:  5'- gACGGCGugGG-CGGGaaGCAGCGcgucgcuGUGGUg -3'
miRNA:   3'- -UGUCGCugCCuGCCU--UGUUGC-------UACCG- -5'
13935 3' -53.3 NC_003521.1 + 74805 0.76 0.685138
Target:  5'- aGCGGCGagacGCGGACGGAcgGCGccgagcGCGAcGGCg -3'
miRNA:   3'- -UGUCGC----UGCCUGCCU--UGU------UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 111384 0.76 0.695034
Target:  5'- aGCGGCGACGGAgGGGAC-GCGcugcagcGGCu -3'
miRNA:   3'- -UGUCGCUGCCUgCCUUGuUGCua-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 239258 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 212862 0.75 0.701932
Target:  5'- gGCAGCGGuauggucgucgucgUGGACGcGGGCGACGggGGUg -3'
miRNA:   3'- -UGUCGCU--------------GCCUGC-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 91946 0.75 0.734028
Target:  5'- cCGGCGGCGGACcccguGGCGGCGAgGGCg -3'
miRNA:   3'- uGUCGCUGCCUGcc---UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 168547 0.75 0.734028
Target:  5'- cGCGGCGGCGGcgcugGCGGGcuGCGGguaaGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC-----UGCCU--UGUUg---CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 28254 0.75 0.743587
Target:  5'- gACGGCGcCGaGA-GGAACAGCGgcGGCg -3'
miRNA:   3'- -UGUCGCuGC-CUgCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 168496 0.74 0.771665
Target:  5'- -gGGCGGCGaGACGGAggcggaggACGGCGAcgccagcaggcUGGCg -3'
miRNA:   3'- ugUCGCUGC-CUGCCU--------UGUUGCU-----------ACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.