miRNA display CGI


Results 61 - 80 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 32437 0.75 0.743587
Target:  5'- cGCAGC-ACuuucGAUGGAACAACGcgGGCg -3'
miRNA:   3'- -UGUCGcUGc---CUGCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 59814 0.74 0.766128
Target:  5'- cGCGGCGcCGGACgcgGGAAaggggugcugcgauuCGACGAUGGUg -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUU---------------GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 168496 0.74 0.771665
Target:  5'- -gGGCGGCGaGACGGAggcggaggACGGCGAcgccagcaggcUGGCg -3'
miRNA:   3'- ugUCGCUGC-CUGCCU--------UGUUGCU-----------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 205280 0.74 0.771665
Target:  5'- uACGGCGGCguGGGCGaGAACcuGGCGGUGcGCg -3'
miRNA:   3'- -UGUCGCUG--CCUGC-CUUG--UUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 124096 0.74 0.788906
Target:  5'- gACGGCGugGG-CGGGaaGCAGCGcgucgcuGUGGUg -3'
miRNA:   3'- -UGUCGCugCCuGCCU--UGUUGC-------UACCG- -5'
13935 3' -53.3 NC_003521.1 + 169219 0.74 0.7898
Target:  5'- aGCAGCGGgaGcGACGGcGACAGCGgcGGCc -3'
miRNA:   3'- -UGUCGCUg-C-CUGCC-UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 74695 0.74 0.7898
Target:  5'- aGCAGCGACGG-CGGcGCcGCGGcagcGGCu -3'
miRNA:   3'- -UGUCGCUGCCuGCCuUGuUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 127306 0.74 0.7898
Target:  5'- gACGGCGACGGccagcgcgACGGGcACcGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGCC--------UGCCU-UGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 140734 0.74 0.797787
Target:  5'- cGCGGCGaagccacGCGGACGGGugACGGgGAcGGCa -3'
miRNA:   3'- -UGUCGC-------UGCCUGCCU--UGUUgCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 197483 0.74 0.798668
Target:  5'- cACGcGCGGCGGGCcGGACGGCGcgGaGCa -3'
miRNA:   3'- -UGU-CGCUGCCUGcCUUGUUGCuaC-CG- -5'
13935 3' -53.3 NC_003521.1 + 223934 0.74 0.798668
Target:  5'- aGCAGCGGCGcGAggccgaGGcGCAGCGcUGGCa -3'
miRNA:   3'- -UGUCGCUGC-CUg-----CCuUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 224014 0.73 0.807391
Target:  5'- gGCAGCGGCGGGCccGGCGGuCGGggcgGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGccUUGUU-GCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 160556 0.73 0.807391
Target:  5'- gGCAGCGAC-GACGaGuacGACGACGAcGGCu -3'
miRNA:   3'- -UGUCGCUGcCUGC-C---UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 184015 0.73 0.807391
Target:  5'- aGCGGCGACGaGGgGGAaaACGACGAgGGa -3'
miRNA:   3'- -UGUCGCUGC-CUgCCU--UGUUGCUaCCg -5'
13935 3' -53.3 NC_003521.1 + 142769 0.73 0.815961
Target:  5'- -uGGUGGCGG-CGGccACGACGGUGGUu -3'
miRNA:   3'- ugUCGCUGCCuGCCu-UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 32358 0.73 0.815961
Target:  5'- -gAGcCGGCgGGACGGGGCuuuUGGUGGCg -3'
miRNA:   3'- ugUC-GCUG-CCUGCCUUGuu-GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 113578 0.73 0.815961
Target:  5'- cGCGGUGGggcUGGGCcucgGGGGCAACGggGGCg -3'
miRNA:   3'- -UGUCGCU---GCCUG----CCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 151260 0.73 0.815961
Target:  5'- gACGGCGACGacgaGGAgcGCGACGAgugGGCc -3'
miRNA:   3'- -UGUCGCUGCcug-CCU--UGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 229307 0.73 0.815961
Target:  5'- cGCAuGuCGACGGugcGCGGAGCGACuguUGGCa -3'
miRNA:   3'- -UGU-C-GCUGCC---UGCCUUGUUGcu-ACCG- -5'
13935 3' -53.3 NC_003521.1 + 117377 0.73 0.815961
Target:  5'- -aGGCGGCGG-CuGAGCGGCGGaGGCg -3'
miRNA:   3'- ugUCGCUGCCuGcCUUGUUGCUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.