miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 74573 0.77 0.645214
Target:  5'- -gGGCGGC-GACGGAGCGGCGGcgcGGCg -3'
miRNA:   3'- ugUCGCUGcCUGCCUUGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 92027 0.76 0.659231
Target:  5'- gGCGGCGGCGGugGGuccggggguccccggGGugccucccgUAGCGAUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugCC---------------UU---------GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 50539 0.76 0.665227
Target:  5'- aGCAGCGGCGGAccCGGcuGCAGCGGcaguacGGCg -3'
miRNA:   3'- -UGUCGCUGCCU--GCCu-UGUUGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 130237 0.76 0.665227
Target:  5'- gGCAGCGACGGugcACGuaGAGCAGCGGcccgcGGCa -3'
miRNA:   3'- -UGUCGCUGCC---UGC--CUUGUUGCUa----CCG- -5'
13935 3' -53.3 NC_003521.1 + 209554 0.76 0.6752
Target:  5'- cCGGCGG-GGugGcGGCGACGGUGGCg -3'
miRNA:   3'- uGUCGCUgCCugCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 74805 0.76 0.685138
Target:  5'- aGCGGCGagacGCGGACGGAcgGCGccgagcGCGAcGGCg -3'
miRNA:   3'- -UGUCGC----UGCCUGCCU--UGU------UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 163181 0.76 0.685138
Target:  5'- aACAGCGGCa-GCGGAcACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGccUGCCU-UGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 37756 0.76 0.685138
Target:  5'- uACAGCGugGcGAUGGGggugcccugcgGCAccACGGUGGCc -3'
miRNA:   3'- -UGUCGCugC-CUGCCU-----------UGU--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 117520 0.76 0.695034
Target:  5'- gACGGCGGUGG-CGGGAUGGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 239258 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 111384 0.76 0.695034
Target:  5'- aGCGGCGACGGAgGGGAC-GCGcugcagcGGCu -3'
miRNA:   3'- -UGUCGCUGCCUgCCUUGuUGCua-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 202058 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 212862 0.75 0.701932
Target:  5'- gGCAGCGGuauggucgucgucgUGGACGcGGGCGACGggGGUg -3'
miRNA:   3'- -UGUCGCU--------------GCCUGC-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 29374 0.75 0.714666
Target:  5'- cGCAGCGcGCGGAUGGuGCGGCGAaagUGcGCc -3'
miRNA:   3'- -UGUCGC-UGCCUGCCuUGUUGCU---AC-CG- -5'
13935 3' -53.3 NC_003521.1 + 233518 0.75 0.722448
Target:  5'- aGCAGCGugGGuACGGugacgagugacguAGCAugacgcaagcuguACGGUGGCg -3'
miRNA:   3'- -UGUCGCugCC-UGCC-------------UUGU-------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 168547 0.75 0.734028
Target:  5'- cGCGGCGGCGGcgcugGCGGGcuGCGGguaaGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC-----UGCCU--UGUUg---CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 91946 0.75 0.734028
Target:  5'- cCGGCGGCGGACcccguGGCGGCGAgGGCg -3'
miRNA:   3'- uGUCGCUGCCUGcc---UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 28254 0.75 0.743587
Target:  5'- gACGGCGcCGaGA-GGAACAGCGgcGGCg -3'
miRNA:   3'- -UGUCGCuGC-CUgCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 32437 0.75 0.743587
Target:  5'- cGCAGC-ACuuucGAUGGAACAACGcgGGCg -3'
miRNA:   3'- -UGUCGcUGc---CUGCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 194665 0.75 0.743587
Target:  5'- aGCGGCGACGGGCGaagcguauAACAGCGAgucGCg -3'
miRNA:   3'- -UGUCGCUGCCUGCc-------UUGUUGCUac-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.