miRNA display CGI


Results 21 - 40 of 434 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 218693 0.79 0.50712
Target:  5'- gGCGGCGGCGaaGGCGGAggagACGGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGC--CUGCCU----UGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 54463 0.79 0.510928
Target:  5'- cGCGGCGGCGGugGuGGcgGCAagucgacgucgcgcgGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCugC-CU--UGU---------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 218436 0.79 0.516662
Target:  5'- gACAGCGGCGGcaccACGGAggACAugGccGGCa -3'
miRNA:   3'- -UGUCGCUGCC----UGCCU--UGUugCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 135806 0.79 0.526276
Target:  5'- aGCAGCGGCGGAgGGAggcgcgGCGACGAacGCu -3'
miRNA:   3'- -UGUCGCUGCCUgCCU------UGUUGCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 164721 0.79 0.535956
Target:  5'- gGCAGCGGCGaccguGACGGccgcGGCcGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGC-----CUGCC----UUGuUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 91861 0.78 0.545699
Target:  5'- -gGGCGGCGGACcaGGACGGCGgcGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 76887 0.78 0.545699
Target:  5'- -aGGCGgaACGG-CGGGGCGGCGGUGGUa -3'
miRNA:   3'- ugUCGC--UGCCuGCCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 77747 0.78 0.555497
Target:  5'- cUAGCGGCGGuuguaGCGGuAGCAGCGgcGGCg -3'
miRNA:   3'- uGUCGCUGCC-----UGCC-UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 30671 0.78 0.575239
Target:  5'- cGCAGCGugGucGGCGuGGGCGGCGAcGGCa -3'
miRNA:   3'- -UGUCGCugC--CUGC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 78147 0.78 0.575239
Target:  5'- aGCGGCGGCGGcCGcGAACGAggcacgauccUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGC-CUUGUU----------GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 30985 0.78 0.585172
Target:  5'- aGCAGCuGCGGAucgggaUGGGGCGACGAcGGCg -3'
miRNA:   3'- -UGUCGcUGCCU------GCCUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 68755 0.78 0.585172
Target:  5'- --cGCGGCGGACGGGugAGgGgcGGCg -3'
miRNA:   3'- uguCGCUGCCUGCCUugUUgCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 142863 0.78 0.585172
Target:  5'- aGCGGCGugGGagGCGGGGaGGCGggGGCg -3'
miRNA:   3'- -UGUCGCugCC--UGCCUUgUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 54324 0.77 0.615138
Target:  5'- uCGGCGGCaucGGCGGAgGCGGCGGUGGUg -3'
miRNA:   3'- uGUCGCUGc--CUGCCU-UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 142618 0.77 0.615138
Target:  5'- gGCGGCGGCGGcCGcGGCGGCcGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCcUUGUUGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 105828 0.77 0.625161
Target:  5'- cACGGCGGCGGACGccGACGACGA-GGa -3'
miRNA:   3'- -UGUCGCUGCCUGCc-UUGUUGCUaCCg -5'
13935 3' -53.3 NC_003521.1 + 163756 0.77 0.625161
Target:  5'- aACAGCGGCGcucacggcGGCGGcAACAACGGUagcGGCg -3'
miRNA:   3'- -UGUCGCUGC--------CUGCC-UUGUUGCUA---CCG- -5'
13935 3' -53.3 NC_003521.1 + 227095 0.77 0.635188
Target:  5'- cGCGGCGGCGGGCGaGGACccC-AUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGC-CUUGuuGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 18733 0.77 0.645214
Target:  5'- gGCGGCGGCGauCGuGGCGGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCcuGCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 74573 0.77 0.645214
Target:  5'- -gGGCGGC-GACGGAGCGGCGGcgcGGCg -3'
miRNA:   3'- ugUCGCUGcCUGCCUUGUUGCUa--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.