miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 97522 0.66 0.993502
Target:  5'- -gGGCGACc-ACGGAGagaGACGAcGGCg -3'
miRNA:   3'- ugUCGCUGccUGCCUUg--UUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 213306 0.66 0.992559
Target:  5'- -aGGUGACGGACaucauGAugAagAgGAUGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc----CUugU--UgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 142545 0.66 0.992559
Target:  5'- uGCAGCGGCGG-CGGGuccCAGCccgagcccGAgucGGCc -3'
miRNA:   3'- -UGUCGCUGCCuGCCUu--GUUG--------CUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 71103 0.66 0.992559
Target:  5'- gGCGGCGGCGG--GGGACGcuuuccAUGA-GGCc -3'
miRNA:   3'- -UGUCGCUGCCugCCUUGU------UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 102046 0.66 0.992559
Target:  5'- cGCAGC-ACGGcCGGGuugaGCAcuACGGuguUGGCg -3'
miRNA:   3'- -UGUCGcUGCCuGCCU----UGU--UGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 48270 0.66 0.992559
Target:  5'- gACGGUGaACGG-CGGuuccAACAACGucacGGCg -3'
miRNA:   3'- -UGUCGC-UGCCuGCC----UUGUUGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 113357 0.66 0.992559
Target:  5'- -gGGgGACGGGCcgGGGGCGAgGAggagGGUu -3'
miRNA:   3'- ugUCgCUGCCUG--CCUUGUUgCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 179662 0.66 0.992559
Target:  5'- cACAGgGAagaauaUGGACGuGggUggUGGUGGUu -3'
miRNA:   3'- -UGUCgCU------GCCUGC-CuuGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 103806 0.66 0.992559
Target:  5'- cCGGCGAgaugacCGuGCGGAACA--GGUGGCu -3'
miRNA:   3'- uGUCGCU------GCcUGCCUUGUugCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 66962 0.66 0.992559
Target:  5'- cGCuGCGGCaGGACGaGcGCAGCc-UGGCa -3'
miRNA:   3'- -UGuCGCUG-CCUGC-CuUGUUGcuACCG- -5'
13935 3' -53.3 NC_003521.1 + 192646 0.66 0.992559
Target:  5'- --cGCGACGG-CGGGAacuCGGgcuugGGCg -3'
miRNA:   3'- uguCGCUGCCuGCCUUguuGCUa----CCG- -5'
13935 3' -53.3 NC_003521.1 + 232351 0.66 0.992559
Target:  5'- aACGGgGACGcggaaaaacgaGACGcGACAGcCGAUGGUa -3'
miRNA:   3'- -UGUCgCUGC-----------CUGCcUUGUU-GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 217268 0.66 0.992559
Target:  5'- ---aUGACGGACgaGGAGCAGgCGcUGGCc -3'
miRNA:   3'- ugucGCUGCCUG--CCUUGUU-GCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 240127 0.66 0.992559
Target:  5'- uGCGGUcgucccGGCGGGCGcGGAaAGCGcUGGCu -3'
miRNA:   3'- -UGUCG------CUGCCUGC-CUUgUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 143050 0.66 0.992459
Target:  5'- --cGCGACcuGGAUGGuggugguGGCGcCGGUGGCg -3'
miRNA:   3'- uguCGCUG--CCUGCC-------UUGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 203714 0.66 0.992459
Target:  5'- uCGGCGACuG-CGGuguucgaGGCGGCGggGGCg -3'
miRNA:   3'- uGUCGCUGcCuGCC-------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 55939 0.66 0.991511
Target:  5'- cCAGUuccucuCGGugGGGcccgACGACGAggUGGCg -3'
miRNA:   3'- uGUCGcu----GCCugCCU----UGUUGCU--ACCG- -5'
13935 3' -53.3 NC_003521.1 + 224596 0.66 0.991511
Target:  5'- uGCGGCGACGcuacgagcACGGGcuGCGGCGcucGGCu -3'
miRNA:   3'- -UGUCGCUGCc-------UGCCU--UGUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 131413 0.66 0.991511
Target:  5'- gUAGCGGCGGAUGcGAuCGGcCGAggGGUc -3'
miRNA:   3'- uGUCGCUGCCUGC-CUuGUU-GCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 71798 0.66 0.991511
Target:  5'- uCGGCGGCGGGCucGGuGACGuCGGccGGCg -3'
miRNA:   3'- uGUCGCUGCCUG--CC-UUGUuGCUa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.