miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 26059 0.67 0.982567
Target:  5'- gGCAGCuGAUGGugGGcuGCAGCcgcGUGGa -3'
miRNA:   3'- -UGUCG-CUGCCugCCu-UGUUGc--UACCg -5'
13935 3' -53.3 NC_003521.1 + 27975 0.68 0.978389
Target:  5'- gGCGGCGcucACGGccACGGcGGCAGCGugagcGGCa -3'
miRNA:   3'- -UGUCGC---UGCC--UGCC-UUGUUGCua---CCG- -5'
13935 3' -53.3 NC_003521.1 + 28254 0.75 0.743587
Target:  5'- gACGGCGcCGaGA-GGAACAGCGgcGGCg -3'
miRNA:   3'- -UGUCGCuGC-CUgCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 28280 0.69 0.950229
Target:  5'- cGCGGCGugcUGGAgGaGGACAGCGA-GGUg -3'
miRNA:   3'- -UGUCGCu--GCCUgC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 28314 0.71 0.916183
Target:  5'- gGCAGCGaccccggcGCGGccuGCGGAcCGcCGGUGGCc -3'
miRNA:   3'- -UGUCGC--------UGCC---UGCCUuGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 28837 0.68 0.970796
Target:  5'- uGCGGCGcCuGGACGacGAGCuGCGgcGGCg -3'
miRNA:   3'- -UGUCGCuG-CCUGC--CUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 29056 0.69 0.946047
Target:  5'- uCGGUGACGGGCuugucGGAgcgcagaaaguGCAgcgcuaggGCGGUGGCg -3'
miRNA:   3'- uGUCGCUGCCUG-----CCU-----------UGU--------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 29374 0.75 0.714666
Target:  5'- cGCAGCGcGCGGAUGGuGCGGCGAaagUGcGCc -3'
miRNA:   3'- -UGUCGC-UGCCUGCCuUGUUGCU---AC-CG- -5'
13935 3' -53.3 NC_003521.1 + 29996 0.68 0.970796
Target:  5'- cCGGCGGgGGACuGGAGgGAUGuuguUGGUg -3'
miRNA:   3'- uGUCGCUgCCUG-CCUUgUUGCu---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 30671 0.78 0.575239
Target:  5'- cGCAGCGugGucGGCGuGGGCGGCGAcGGCa -3'
miRNA:   3'- -UGUCGCugC--CUGC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 30985 0.78 0.585172
Target:  5'- aGCAGCuGCGGAucgggaUGGGGCGACGAcGGCg -3'
miRNA:   3'- -UGUCGcUGCCU------GCCUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 31096 0.71 0.916183
Target:  5'- gACGGCGGCGGcCGGuAC-ACGcgGcGCa -3'
miRNA:   3'- -UGUCGCUGCCuGCCuUGuUGCuaC-CG- -5'
13935 3' -53.3 NC_003521.1 + 31162 0.66 0.994266
Target:  5'- cGCAGCGAgaugcaaCGGuaguCGGGGauGCGGUGGa -3'
miRNA:   3'- -UGUCGCU-------GCCu---GCCUUguUGCUACCg -5'
13935 3' -53.3 NC_003521.1 + 31561 0.67 0.980562
Target:  5'- uCGGCGAagcccaGGucGCGGGAC-ACGcUGGCa -3'
miRNA:   3'- uGUCGCUg-----CC--UGCCUUGuUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 32006 0.68 0.970796
Target:  5'- cCGGuCGAgGcGGCGGAG--GCGGUGGCc -3'
miRNA:   3'- uGUC-GCUgC-CUGCCUUguUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 32358 0.73 0.815961
Target:  5'- -gAGcCGGCgGGACGGGGCuuuUGGUGGCg -3'
miRNA:   3'- ugUC-GCUG-CCUGCCUUGuu-GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 32437 0.75 0.743587
Target:  5'- cGCAGC-ACuuucGAUGGAACAACGcgGGCg -3'
miRNA:   3'- -UGUCGcUGc---CUGCCUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 32963 0.66 0.991511
Target:  5'- aACGGCG-CGGAcaaCGGAACcagAAgGAgcccUGGCg -3'
miRNA:   3'- -UGUCGCuGCCU---GCCUUG---UUgCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 33160 0.73 0.84068
Target:  5'- -gGGCGGCGGgcACGGcggcagcaccGGCGGCGcgGGCg -3'
miRNA:   3'- ugUCGCUGCC--UGCC----------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 35963 0.69 0.954189
Target:  5'- aGCGGagGAUGGGCGacgaGGACGACGAaccgGGCu -3'
miRNA:   3'- -UGUCg-CUGCCUGC----CUUGUUGCUa---CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.