Results 21 - 40 of 434 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 3' | -53.3 | NC_003521.1 | + | 26059 | 0.67 | 0.982567 |
Target: 5'- gGCAGCuGAUGGugGGcuGCAGCcgcGUGGa -3' miRNA: 3'- -UGUCG-CUGCCugCCu-UGUUGc--UACCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 27975 | 0.68 | 0.978389 |
Target: 5'- gGCGGCGcucACGGccACGGcGGCAGCGugagcGGCa -3' miRNA: 3'- -UGUCGC---UGCC--UGCC-UUGUUGCua---CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 28254 | 0.75 | 0.743587 |
Target: 5'- gACGGCGcCGaGA-GGAACAGCGgcGGCg -3' miRNA: 3'- -UGUCGCuGC-CUgCCUUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 28280 | 0.69 | 0.950229 |
Target: 5'- cGCGGCGugcUGGAgGaGGACAGCGA-GGUg -3' miRNA: 3'- -UGUCGCu--GCCUgC-CUUGUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 28314 | 0.71 | 0.916183 |
Target: 5'- gGCAGCGaccccggcGCGGccuGCGGAcCGcCGGUGGCc -3' miRNA: 3'- -UGUCGC--------UGCC---UGCCUuGUuGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 28837 | 0.68 | 0.970796 |
Target: 5'- uGCGGCGcCuGGACGacGAGCuGCGgcGGCg -3' miRNA: 3'- -UGUCGCuG-CCUGC--CUUGuUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 29056 | 0.69 | 0.946047 |
Target: 5'- uCGGUGACGGGCuugucGGAgcgcagaaaguGCAgcgcuaggGCGGUGGCg -3' miRNA: 3'- uGUCGCUGCCUG-----CCU-----------UGU--------UGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 29374 | 0.75 | 0.714666 |
Target: 5'- cGCAGCGcGCGGAUGGuGCGGCGAaagUGcGCc -3' miRNA: 3'- -UGUCGC-UGCCUGCCuUGUUGCU---AC-CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 29996 | 0.68 | 0.970796 |
Target: 5'- cCGGCGGgGGACuGGAGgGAUGuuguUGGUg -3' miRNA: 3'- uGUCGCUgCCUG-CCUUgUUGCu---ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 30671 | 0.78 | 0.575239 |
Target: 5'- cGCAGCGugGucGGCGuGGGCGGCGAcGGCa -3' miRNA: 3'- -UGUCGCugC--CUGC-CUUGUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 30985 | 0.78 | 0.585172 |
Target: 5'- aGCAGCuGCGGAucgggaUGGGGCGACGAcGGCg -3' miRNA: 3'- -UGUCGcUGCCU------GCCUUGUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 31096 | 0.71 | 0.916183 |
Target: 5'- gACGGCGGCGGcCGGuAC-ACGcgGcGCa -3' miRNA: 3'- -UGUCGCUGCCuGCCuUGuUGCuaC-CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 31162 | 0.66 | 0.994266 |
Target: 5'- cGCAGCGAgaugcaaCGGuaguCGGGGauGCGGUGGa -3' miRNA: 3'- -UGUCGCU-------GCCu---GCCUUguUGCUACCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 31561 | 0.67 | 0.980562 |
Target: 5'- uCGGCGAagcccaGGucGCGGGAC-ACGcUGGCa -3' miRNA: 3'- uGUCGCUg-----CC--UGCCUUGuUGCuACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 32006 | 0.68 | 0.970796 |
Target: 5'- cCGGuCGAgGcGGCGGAG--GCGGUGGCc -3' miRNA: 3'- uGUC-GCUgC-CUGCCUUguUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 32358 | 0.73 | 0.815961 |
Target: 5'- -gAGcCGGCgGGACGGGGCuuuUGGUGGCg -3' miRNA: 3'- ugUC-GCUG-CCUGCCUUGuu-GCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 32437 | 0.75 | 0.743587 |
Target: 5'- cGCAGC-ACuuucGAUGGAACAACGcgGGCg -3' miRNA: 3'- -UGUCGcUGc---CUGCCUUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 32963 | 0.66 | 0.991511 |
Target: 5'- aACGGCG-CGGAcaaCGGAACcagAAgGAgcccUGGCg -3' miRNA: 3'- -UGUCGCuGCCU---GCCUUG---UUgCU----ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 33160 | 0.73 | 0.84068 |
Target: 5'- -gGGCGGCGGgcACGGcggcagcaccGGCGGCGcgGGCg -3' miRNA: 3'- ugUCGCUGCC--UGCC----------UUGUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 35963 | 0.69 | 0.954189 |
Target: 5'- aGCGGagGAUGGGCGacgaGGACGACGAaccgGGCu -3' miRNA: 3'- -UGUCg-CUGCCUGC----CUUGUUGCUa---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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