miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 4600 0.69 0.961458
Target:  5'- cCGGCGGCGGugGcGccaGGCAugGAcGGUc -3'
miRNA:   3'- uGUCGCUGCCugC-C---UUGUugCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 4635 0.68 0.967885
Target:  5'- -gAGCGAgcgGGACGcGGGCcGCGAUGaGCg -3'
miRNA:   3'- ugUCGCUg--CCUGC-CUUGuUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 4933 0.69 0.961458
Target:  5'- --cGCGACGucgccGGCGGGACcuagcgGACGAUGGg -3'
miRNA:   3'- uguCGCUGC-----CUGCCUUG------UUGCUACCg -5'
13935 3' -53.3 NC_003521.1 + 5526 0.71 0.916183
Target:  5'- aGCAGCGACGGugACGGcAGcCGGCGc-GGCc -3'
miRNA:   3'- -UGUCGCUGCC--UGCC-UU-GUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 5653 0.66 0.994346
Target:  5'- cAUGGCGGCGGAgggUGGGGgGuCGAgacacgGGCg -3'
miRNA:   3'- -UGUCGCUGCCU---GCCUUgUuGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 5826 1.13 0.005511
Target:  5'- gACAGCGACGGACGGAACAACGAUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGCCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 6272 0.72 0.871066
Target:  5'- gACAGCGAUGacgaagacgacGACgGGGACGGCGAUaGCg -3'
miRNA:   3'- -UGUCGCUGC-----------CUG-CCUUGUUGCUAcCG- -5'
13935 3' -53.3 NC_003521.1 + 6409 0.7 0.936531
Target:  5'- gGCGGCGACGGGucuugccgccuCGGGACGcucauugacggucAUGAcGGCc -3'
miRNA:   3'- -UGUCGCUGCCU-----------GCCUUGU-------------UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 10472 0.71 0.89817
Target:  5'- uCGGgGACGGggauaACGGAGCAuGCGccGGCg -3'
miRNA:   3'- uGUCgCUGCC-----UGCCUUGU-UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 16585 0.71 0.89817
Target:  5'- -aGGCGACcggggaGGACGGAggAUggUGGUGGUg -3'
miRNA:   3'- ugUCGCUG------CCUGCCU--UGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 17024 0.71 0.904399
Target:  5'- aACAGCG--GGAagaGGAGCGACGAcaacGGCa -3'
miRNA:   3'- -UGUCGCugCCUg--CCUUGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 17461 0.7 0.921733
Target:  5'- gGCAGCGcuCGGA-GGAGaGACGAcGGCa -3'
miRNA:   3'- -UGUCGCu-GCCUgCCUUgUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 17776 0.67 0.987655
Target:  5'- cCGGCGGCGGACGGucaGGUGAaGGa -3'
miRNA:   3'- uGUCGCUGCCUGCCuugUUGCUaCCg -5'
13935 3' -53.3 NC_003521.1 + 18092 0.69 0.950229
Target:  5'- gACGGCcGCggGGACGGAGgaggUAGCGGUGGa -3'
miRNA:   3'- -UGUCGcUG--CCUGCCUU----GUUGCUACCg -5'
13935 3' -53.3 NC_003521.1 + 18259 0.69 0.961458
Target:  5'- -gAGCGGUGGugGGGaccugcccGCGACGGgagGGCc -3'
miRNA:   3'- ugUCGCUGCCugCCU--------UGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 18733 0.77 0.645214
Target:  5'- gGCGGCGGCGauCGuGGCGGCGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCcuGCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 19150 0.68 0.973513
Target:  5'- cACGGCGugGuGAcCGaGAGCAcggcGCuGGUGGCc -3'
miRNA:   3'- -UGUCGCugC-CU-GC-CUUGU----UG-CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 21247 0.72 0.845434
Target:  5'- aACAGCGcguacuccaugucCGGACGGuauCGACGAcGGCg -3'
miRNA:   3'- -UGUCGCu------------GCCUGCCuu-GUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 24240 0.7 0.927054
Target:  5'- gGCAGCGGgcgguCGGGCGGuAUAuCGgcGGCg -3'
miRNA:   3'- -UGUCGCU-----GCCUGCCuUGUuGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 24326 0.66 0.991288
Target:  5'- cACAGCGACGauccgaugaaucggcGGCGGGACcuGAaggugcuggugaugcUGAUGGUa -3'
miRNA:   3'- -UGUCGCUGC---------------CUGCCUUG--UU---------------GCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.