Results 1 - 20 of 434 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 3' | -53.3 | NC_003521.1 | + | 4600 | 0.69 | 0.961458 |
Target: 5'- cCGGCGGCGGugGcGccaGGCAugGAcGGUc -3' miRNA: 3'- uGUCGCUGCCugC-C---UUGUugCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 4635 | 0.68 | 0.967885 |
Target: 5'- -gAGCGAgcgGGACGcGGGCcGCGAUGaGCg -3' miRNA: 3'- ugUCGCUg--CCUGC-CUUGuUGCUAC-CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 4933 | 0.69 | 0.961458 |
Target: 5'- --cGCGACGucgccGGCGGGACcuagcgGACGAUGGg -3' miRNA: 3'- uguCGCUGC-----CUGCCUUG------UUGCUACCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 5526 | 0.71 | 0.916183 |
Target: 5'- aGCAGCGACGGugACGGcAGcCGGCGc-GGCc -3' miRNA: 3'- -UGUCGCUGCC--UGCC-UU-GUUGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 5653 | 0.66 | 0.994346 |
Target: 5'- cAUGGCGGCGGAgggUGGGGgGuCGAgacacgGGCg -3' miRNA: 3'- -UGUCGCUGCCU---GCCUUgUuGCUa-----CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 5826 | 1.13 | 0.005511 |
Target: 5'- gACAGCGACGGACGGAACAACGAUGGCg -3' miRNA: 3'- -UGUCGCUGCCUGCCUUGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 6272 | 0.72 | 0.871066 |
Target: 5'- gACAGCGAUGacgaagacgacGACgGGGACGGCGAUaGCg -3' miRNA: 3'- -UGUCGCUGC-----------CUG-CCUUGUUGCUAcCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 6409 | 0.7 | 0.936531 |
Target: 5'- gGCGGCGACGGGucuugccgccuCGGGACGcucauugacggucAUGAcGGCc -3' miRNA: 3'- -UGUCGCUGCCU-----------GCCUUGU-------------UGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 10472 | 0.71 | 0.89817 |
Target: 5'- uCGGgGACGGggauaACGGAGCAuGCGccGGCg -3' miRNA: 3'- uGUCgCUGCC-----UGCCUUGU-UGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 16585 | 0.71 | 0.89817 |
Target: 5'- -aGGCGACcggggaGGACGGAggAUggUGGUGGUg -3' miRNA: 3'- ugUCGCUG------CCUGCCU--UGuuGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 17024 | 0.71 | 0.904399 |
Target: 5'- aACAGCG--GGAagaGGAGCGACGAcaacGGCa -3' miRNA: 3'- -UGUCGCugCCUg--CCUUGUUGCUa---CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 17461 | 0.7 | 0.921733 |
Target: 5'- gGCAGCGcuCGGA-GGAGaGACGAcGGCa -3' miRNA: 3'- -UGUCGCu-GCCUgCCUUgUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 17776 | 0.67 | 0.987655 |
Target: 5'- cCGGCGGCGGACGGucaGGUGAaGGa -3' miRNA: 3'- uGUCGCUGCCUGCCuugUUGCUaCCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 18092 | 0.69 | 0.950229 |
Target: 5'- gACGGCcGCggGGACGGAGgaggUAGCGGUGGa -3' miRNA: 3'- -UGUCGcUG--CCUGCCUU----GUUGCUACCg -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 18259 | 0.69 | 0.961458 |
Target: 5'- -gAGCGGUGGugGGGaccugcccGCGACGGgagGGCc -3' miRNA: 3'- ugUCGCUGCCugCCU--------UGUUGCUa--CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 18733 | 0.77 | 0.645214 |
Target: 5'- gGCGGCGGCGauCGuGGCGGCGGUGGCg -3' miRNA: 3'- -UGUCGCUGCcuGCcUUGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 19150 | 0.68 | 0.973513 |
Target: 5'- cACGGCGugGuGAcCGaGAGCAcggcGCuGGUGGCc -3' miRNA: 3'- -UGUCGCugC-CU-GC-CUUGU----UG-CUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 21247 | 0.72 | 0.845434 |
Target: 5'- aACAGCGcguacuccaugucCGGACGGuauCGACGAcGGCg -3' miRNA: 3'- -UGUCGCu------------GCCUGCCuu-GUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 24240 | 0.7 | 0.927054 |
Target: 5'- gGCAGCGGgcgguCGGGCGGuAUAuCGgcGGCg -3' miRNA: 3'- -UGUCGCU-----GCCUGCCuUGUuGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 24326 | 0.66 | 0.991288 |
Target: 5'- cACAGCGACGauccgaugaaucggcGGCGGGACcuGAaggugcuggugaugcUGAUGGUa -3' miRNA: 3'- -UGUCGCUGC---------------CUGCCUUG--UU---------------GCUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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