miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 147446 0.66 0.989067
Target:  5'- gGCuGCG-CGcGCGGAAgUAGCGgAUGGCg -3'
miRNA:   3'- -UGuCGCuGCcUGCCUU-GUUGC-UACCG- -5'
13935 3' -53.3 NC_003521.1 + 80475 0.66 0.988657
Target:  5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3'
miRNA:   3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 46431 0.66 0.990349
Target:  5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3'
miRNA:   3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 106647 0.66 0.994346
Target:  5'- cCGaCGACGGA-GGAgGCGGCGGagaUGGCg -3'
miRNA:   3'- uGUcGCUGCCUgCCU-UGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 163918 0.66 0.990349
Target:  5'- gGguGCGGCGGcaGCGG--CAACGAaagaGGCg -3'
miRNA:   3'- -UguCGCUGCC--UGCCuuGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 88475 0.66 0.990227
Target:  5'- uGCAGCGAguugaagagggUGGGCGGGuagagcggcacgcGCAGCGAcucGCa -3'
miRNA:   3'- -UGUCGCU-----------GCCUGCCU-------------UGUUGCUac-CG- -5'
13935 3' -53.3 NC_003521.1 + 116389 0.66 0.989067
Target:  5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3'
miRNA:   3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 162772 0.66 0.989067
Target:  5'- cGCAcGCGugGuGgacuGCGuGGACGGCGAaGGCa -3'
miRNA:   3'- -UGU-CGCugC-C----UGC-CUUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 174490 0.66 0.990349
Target:  5'- aACAcUGAUGGAaGGAcuGCAgggccGCGAUGGCc -3'
miRNA:   3'- -UGUcGCUGCCUgCCU--UGU-----UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 113112 0.66 0.989067
Target:  5'- aGCGGCucuCGGGCcaGGugcGCGACGAUGuGCu -3'
miRNA:   3'- -UGUCGcu-GCCUG--CCu--UGUUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 132427 0.66 0.990349
Target:  5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3'
miRNA:   3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 217332 0.66 0.990349
Target:  5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3'
miRNA:   3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 146659 0.66 0.990349
Target:  5'- gACGGCGAggaGGACGGcAACGAagcCGAccGCa -3'
miRNA:   3'- -UGUCGCUg--CCUGCC-UUGUU---GCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 115682 0.66 0.990349
Target:  5'- -aGGCGGCcaGGCGGAACAGcCGGUGu- -3'
miRNA:   3'- ugUCGCUGc-CUGCCUUGUU-GCUACcg -5'
13935 3' -53.3 NC_003521.1 + 123184 0.66 0.990349
Target:  5'- cGCGGCGcagucGCaGGCGGAACGACaccgGGUc -3'
miRNA:   3'- -UGUCGC-----UGcCUGCCUUGUUGcua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 202112 0.66 0.990349
Target:  5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3'
miRNA:   3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 103056 0.66 0.990349
Target:  5'- uGCuGCaGACaGGGCGGGu--GCGcgGGCg -3'
miRNA:   3'- -UGuCG-CUG-CCUGCCUuguUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 160485 0.66 0.989067
Target:  5'- -aGGCGAgGaGACGGAcacagcagaccGCGGCGGgaggagggGGCg -3'
miRNA:   3'- ugUCGCUgC-CUGCCU-----------UGUUGCUa-------CCG- -5'
13935 3' -53.3 NC_003521.1 + 50448 0.66 0.989067
Target:  5'- uCAGCGGUGGACGGAGCcgaaagccGCGugucGGUg -3'
miRNA:   3'- uGUCGCUGCCUGCCUUGu-------UGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 110418 0.66 0.990349
Target:  5'- uCAGCGugaGCGuGAgaaCGGAGCGGCGGuuguUGGUg -3'
miRNA:   3'- uGUCGC---UGC-CU---GCCUUGUUGCU----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.