miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 5826 1.13 0.005511
Target:  5'- gACAGCGACGGACGGAACAACGAUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGCCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 239444 0.88 0.174024
Target:  5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 201872 0.88 0.174024
Target:  5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 195309 0.87 0.192018
Target:  5'- -aAGCGGCGGACGGGACGACauGGUGGUu -3'
miRNA:   3'- ugUCGCUGCCUGCCUUGUUG--CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 118573 0.86 0.227437
Target:  5'- cGCGGCGGCGGGCaGGccGGCGGCGGUGGUa -3'
miRNA:   3'- -UGUCGCUGCCUG-CC--UUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 124407 0.86 0.222057
Target:  5'- gGCAGCGGCGG-CGGAggcaGCGGCGcgGGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 171357 0.86 0.238527
Target:  5'- cGCGGUaacGGCGGGCGGGgagGCGGCGGUGGCa -3'
miRNA:   3'- -UGUCG---CUGCCUGCCU---UGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 171434 0.84 0.279635
Target:  5'- gGCAGCGACGGACGGGuaacuauGCAgcguguucgggugACGGUGGUc -3'
miRNA:   3'- -UGUCGCUGCCUGCCU-------UGU-------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 145868 0.84 0.300852
Target:  5'- cCGGCGGCGGGCGGcgccGACGACGA-GGCc -3'
miRNA:   3'- uGUCGCUGCCUGCC----UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 111188 0.83 0.34393
Target:  5'- gACGGCGccGCGGACGGuggGCuggGCGAUGGCg -3'
miRNA:   3'- -UGUCGC--UGCCUGCCu--UGu--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 155970 0.82 0.394575
Target:  5'- gGCAGCGGCGGGCGGcacguagccucccucGGCGGCGAUGa- -3'
miRNA:   3'- -UGUCGCUGCCUGCC---------------UUGUUGCUACcg -5'
13935 3' -53.3 NC_003521.1 + 131051 0.82 0.367076
Target:  5'- gGCGGCGGCGGGCcucuGGACG-CGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGc---CUUGUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 196705 0.82 0.359243
Target:  5'- aGCAGCGACGGccgacuucaccgGCGGcGACggUGGUGGCg -3'
miRNA:   3'- -UGUCGCUGCC------------UGCC-UUGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 127248 0.81 0.416483
Target:  5'- gGCAGCGGCagcgGGGCGGccGGCGACGAcGGCg -3'
miRNA:   3'- -UGUCGCUG----CCUGCC--UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 168439 0.81 0.407969
Target:  5'- cGCGGCGGCGGGCGuGAAgAGCGugauggGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGC-CUUgUUGCua----CCG- -5'
13935 3' -53.3 NC_003521.1 + 142450 0.8 0.469748
Target:  5'- gGCGGCGGCGGuaGCGGcguCGACGAcGGCg -3'
miRNA:   3'- -UGUCGCUGCC--UGCCuu-GUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 142936 0.8 0.469748
Target:  5'- aGCAGCGGCGGucaGGGuCAGCGggGGCc -3'
miRNA:   3'- -UGUCGCUGCCug-CCUuGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 129547 0.8 0.468831
Target:  5'- cGCGGCGGCGcuggcacGGCGGGccCGACGAUGGCu -3'
miRNA:   3'- -UGUCGCUGC-------CUGCCUu-GUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 100512 0.8 0.460624
Target:  5'- -gGGCGuCGGACGGuGC-ACGGUGGCg -3'
miRNA:   3'- ugUCGCuGCCUGCCuUGuUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 114463 0.8 0.457001
Target:  5'- cACGGCGAUGGACGGucgggugacgcgcAGCAuccagaggcagccaACGAUGGCc -3'
miRNA:   3'- -UGUCGCUGCCUGCC-------------UUGU--------------UGCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.