miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 240127 0.66 0.992559
Target:  5'- uGCGGUcgucccGGCGGGCGcGGAaAGCGcUGGCu -3'
miRNA:   3'- -UGUCG------CUGCCUGC-CUUgUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 240038 0.72 0.863764
Target:  5'- -gGGCGcCGGGCGGuccucCGcCGAUGGCg -3'
miRNA:   3'- ugUCGCuGCCUGCCuu---GUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 239444 0.88 0.174024
Target:  5'- aGCAGCG-CGGGCucgGGGACAGCGGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUG---CCUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 239258 0.76 0.695034
Target:  5'- aGCAGCGACGG-CGGGugugGCGcCGA-GGCg -3'
miRNA:   3'- -UGUCGCUGCCuGCCU----UGUuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 239203 0.66 0.990349
Target:  5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3'
miRNA:   3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 238460 0.71 0.891718
Target:  5'- gGCGGCcucGGCGGGCGGGGCGgagACGc-GGCc -3'
miRNA:   3'- -UGUCG---CUGCCUGCCUUGU---UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 236624 0.66 0.989067
Target:  5'- uGCGGCuGACGGuCuGGGCGGCGAUccaGCa -3'
miRNA:   3'- -UGUCG-CUGCCuGcCUUGUUGCUAc--CG- -5'
13935 3' -53.3 NC_003521.1 + 235582 0.7 0.94164
Target:  5'- cGCGG-GACGuGCGGGAgGACGAgaGGCg -3'
miRNA:   3'- -UGUCgCUGCcUGCCUUgUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 234942 0.68 0.970796
Target:  5'- aGCAGCGAggacgacgaCGGcuccagccuGCGGAcCAACGA-GGCc -3'
miRNA:   3'- -UGUCGCU---------GCC---------UGCCUuGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 234623 0.72 0.871066
Target:  5'- aGCGGaUGACGGcACGGGaggcagguccgGCAGCGGaGGCg -3'
miRNA:   3'- -UGUC-GCUGCC-UGCCU-----------UGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 233641 0.67 0.984413
Target:  5'- uCAGCGGCGGcgccguACuGGAGCucgauuACGAgGGCc -3'
miRNA:   3'- uGUCGCUGCC------UG-CCUUGu-----UGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 233518 0.75 0.722448
Target:  5'- aGCAGCGugGGuACGGugacgagugacguAGCAugacgcaagcuguACGGUGGCg -3'
miRNA:   3'- -UGUCGCugCC-UGCC-------------UUGU-------------UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 233425 0.66 0.989067
Target:  5'- cACGGCGGC--GCGGA-CAGCGGUGcccaaGCa -3'
miRNA:   3'- -UGUCGCUGccUGCCUuGUUGCUAC-----CG- -5'
13935 3' -53.3 NC_003521.1 + 233350 0.69 0.964774
Target:  5'- gGCGGCGcgaGCGG-CGGAG--GCGgcGGCa -3'
miRNA:   3'- -UGUCGC---UGCCuGCCUUguUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 233233 0.66 0.991511
Target:  5'- -gGGUGGCGGACGGccuccAUGGgGAUGaGCu -3'
miRNA:   3'- ugUCGCUGCCUGCCu----UGUUgCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 233100 0.72 0.878162
Target:  5'- cGCGGCGGCGGGggagguacCGGGGCAGCGccGUaGCu -3'
miRNA:   3'- -UGUCGCUGCCU--------GCCUUGUUGC--UAcCG- -5'
13935 3' -53.3 NC_003521.1 + 232351 0.66 0.992559
Target:  5'- aACGGgGACGcggaaaaacgaGACGcGACAGcCGAUGGUa -3'
miRNA:   3'- -UGUCgCUGC-----------CUGCcUUGUU-GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 231656 0.68 0.970796
Target:  5'- gACGGCcuguuucacCGGGCGGuACuucauguaGACGAUGGCg -3'
miRNA:   3'- -UGUCGcu-------GCCUGCCuUG--------UUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 229307 0.73 0.815961
Target:  5'- cGCAuGuCGACGGugcGCGGAGCGACuguUGGCa -3'
miRNA:   3'- -UGU-C-GCUGCC---UGCCUUGUUGcu-ACCG- -5'
13935 3' -53.3 NC_003521.1 + 227628 0.71 0.89817
Target:  5'- cGCAGCGGCGGuaGCGccguCGACGGUcugGGCg -3'
miRNA:   3'- -UGUCGCUGCC--UGCcuu-GUUGCUA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.