miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 227438 0.68 0.970796
Target:  5'- -gGGCGGCGGagGCGGGAgAagaggcucggagAgGGUGGCg -3'
miRNA:   3'- ugUCGCUGCC--UGCCUUgU------------UgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 227182 0.72 0.885047
Target:  5'- cCGGCG-CGGAgGGGGCcGCGGaGGCc -3'
miRNA:   3'- uGUCGCuGCCUgCCUUGuUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 227095 0.77 0.635188
Target:  5'- cGCGGCGGCGGGCGaGGACccC-AUGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGC-CUUGuuGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 224983 0.68 0.978389
Target:  5'- uCGGCGAgcaccaCGGGCGGGACGugaacuuccacACGcccgGGCg -3'
miRNA:   3'- uGUCGCU------GCCUGCCUUGU-----------UGCua--CCG- -5'
13935 3' -53.3 NC_003521.1 + 224596 0.66 0.991511
Target:  5'- uGCGGCGACGcuacgagcACGGGcuGCGGCGcucGGCu -3'
miRNA:   3'- -UGUCGCUGCc-------UGCCU--UGUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 224071 0.69 0.953024
Target:  5'- gGCGGCGGCGcaggcccgucgucuGGCGGcccACGGCGGUaacGGCg -3'
miRNA:   3'- -UGUCGCUGC--------------CUGCCu--UGUUGCUA---CCG- -5'
13935 3' -53.3 NC_003521.1 + 224014 0.73 0.807391
Target:  5'- gGCAGCGGCGGGCccGGCGGuCGGggcgGGCg -3'
miRNA:   3'- -UGUCGCUGCCUGccUUGUU-GCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 223934 0.74 0.798668
Target:  5'- aGCAGCGGCGcGAggccgaGGcGCAGCGcUGGCa -3'
miRNA:   3'- -UGUCGCUGC-CUg-----CCuUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 223359 0.68 0.976042
Target:  5'- uCGGCGGCGGccuUGGucAGCAGCGAcaucgcGGCg -3'
miRNA:   3'- uGUCGCUGCCu--GCC--UUGUUGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 222767 0.66 0.994346
Target:  5'- cACGGCGuCGGugGGGuCGGCGcagaGGa -3'
miRNA:   3'- -UGUCGCuGCCugCCUuGUUGCua--CCg -5'
13935 3' -53.3 NC_003521.1 + 222203 0.7 0.920641
Target:  5'- aGCAGCGACgaGGACGaGGcgccgcgGCAGCcccgaagGGUGGCg -3'
miRNA:   3'- -UGUCGCUG--CCUGC-CU-------UGUUG-------CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 222007 0.67 0.982567
Target:  5'- uGCGGCGugGG-CGGGaaGCAcuuggccacGCGAaagcagcgcUGGCc -3'
miRNA:   3'- -UGUCGCugCCuGCCU--UGU---------UGCU---------ACCG- -5'
13935 3' -53.3 NC_003521.1 + 221989 0.66 0.989067
Target:  5'- -gGGgGACGGGgaGGGagACGACGcggGUGGCg -3'
miRNA:   3'- ugUCgCUGCCUg-CCU--UGUUGC---UACCG- -5'
13935 3' -53.3 NC_003521.1 + 221890 0.67 0.982567
Target:  5'- gGC-GUGugGGGCGGAuugcCGGCGcgcGGCg -3'
miRNA:   3'- -UGuCGCugCCUGCCUu---GUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 221352 0.66 0.994346
Target:  5'- cCAGCG-UGG-CGGuGACGGCGucgGGCu -3'
miRNA:   3'- uGUCGCuGCCuGCC-UUGUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 219395 0.7 0.927054
Target:  5'- -aGGCGACGGGC---ACGACGA-GGCc -3'
miRNA:   3'- ugUCGCUGCCUGccuUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 219150 0.7 0.94164
Target:  5'- gGCGGCcuCGGGCuGGAGCAguggGCGAgcgcGGCg -3'
miRNA:   3'- -UGUCGcuGCCUG-CCUUGU----UGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 218927 0.68 0.967885
Target:  5'- cCGGgaGACGGugGaGAGgGACGA-GGCg -3'
miRNA:   3'- uGUCg-CUGCCugC-CUUgUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 218693 0.79 0.50712
Target:  5'- gGCGGCGGCGaaGGCGGAggagACGGCGgcGGCg -3'
miRNA:   3'- -UGUCGCUGC--CUGCCU----UGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 218436 0.79 0.516662
Target:  5'- gACAGCGGCGGcaccACGGAggACAugGccGGCa -3'
miRNA:   3'- -UGUCGCUGCC----UGCCU--UGUugCuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.