miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 218082 0.73 0.823537
Target:  5'- cACAGCGAgGcGGCGGcgccgguGACGAUGAgGGCg -3'
miRNA:   3'- -UGUCGCUgC-CUGCC-------UUGUUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 217332 0.66 0.990349
Target:  5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3'
miRNA:   3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 217268 0.66 0.992559
Target:  5'- ---aUGACGGACgaGGAGCAGgCGcUGGCc -3'
miRNA:   3'- ugucGCUGCCUG--CCUUGUU-GCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 216285 0.66 0.994346
Target:  5'- cCAGCucGugGaGCGG-ACGACGuUGGCg -3'
miRNA:   3'- uGUCG--CugCcUGCCuUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 215798 0.7 0.937006
Target:  5'- gGCAGCGA-GGAgcCGGAggaaaaggacgGCAGCGAUaacaGGCu -3'
miRNA:   3'- -UGUCGCUgCCU--GCCU-----------UGUUGCUA----CCG- -5'
13935 3' -53.3 NC_003521.1 + 215632 0.68 0.973513
Target:  5'- uCGGUGA-GGACGGGGCucCGcAUGGUc -3'
miRNA:   3'- uGUCGCUgCCUGCCUUGuuGC-UACCG- -5'
13935 3' -53.3 NC_003521.1 + 215052 0.66 0.989067
Target:  5'- gGCGGUGAagaGGACGG--CGGCGAgcgGGa -3'
miRNA:   3'- -UGUCGCUg--CCUGCCuuGUUGCUa--CCg -5'
13935 3' -53.3 NC_003521.1 + 214815 0.69 0.957931
Target:  5'- -gGGCGcCGGGCGcGGCGACGgcGGUu -3'
miRNA:   3'- ugUCGCuGCCUGCcUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 214426 0.7 0.936531
Target:  5'- gACGGCGugGGugACGGugcugcagaaguuGAUGACGgcGGCg -3'
miRNA:   3'- -UGUCGCugCC--UGCC-------------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 214160 0.67 0.986106
Target:  5'- -gAGCcGCGGAUGGcuuggucgacgGGCAGuuCGGUGGCa -3'
miRNA:   3'- ugUCGcUGCCUGCC-----------UUGUU--GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 214010 0.68 0.976042
Target:  5'- gACGGUGACacGACGGcGCucAgGGUGGCg -3'
miRNA:   3'- -UGUCGCUGc-CUGCCuUGu-UgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 213445 0.66 0.988931
Target:  5'- cCAGCGACGGGCcuugaaGGcgucgcacgucauGACGGCGccGGUg -3'
miRNA:   3'- uGUCGCUGCCUG------CC-------------UUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 213306 0.66 0.992559
Target:  5'- -aGGUGACGGACaucauGAugAagAgGAUGGCg -3'
miRNA:   3'- ugUCGCUGCCUGc----CUugU--UgCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 212862 0.75 0.701932
Target:  5'- gGCAGCGGuauggucgucgucgUGGACGcGGGCGACGggGGUg -3'
miRNA:   3'- -UGUCGCU--------------GCCUGC-CUUGUUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 210257 0.69 0.961458
Target:  5'- cAUAGCG-CGGACGGGcCuuCuGUGGCc -3'
miRNA:   3'- -UGUCGCuGCCUGCCUuGuuGcUACCG- -5'
13935 3' -53.3 NC_003521.1 + 209554 0.76 0.6752
Target:  5'- cCGGCGG-GGugGcGGCGACGGUGGCg -3'
miRNA:   3'- uGUCGCUgCCugCcUUGUUGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 209455 0.67 0.980562
Target:  5'- cGCGGcCGACGGugGGGuCAucUGGaGGCu -3'
miRNA:   3'- -UGUC-GCUGCCugCCUuGUu-GCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 206445 0.67 0.980562
Target:  5'- gUAGCGAuugacgUGGGCGGGGgauugcccCAuCGGUGGCg -3'
miRNA:   3'- uGUCGCU------GCCUGCCUU--------GUuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 205280 0.74 0.771665
Target:  5'- uACGGCGGCguGGGCGaGAACcuGGCGGUGcGCg -3'
miRNA:   3'- -UGUCGCUG--CCUGC-CUUG--UUGCUAC-CG- -5'
13935 3' -53.3 NC_003521.1 + 204121 0.67 0.982374
Target:  5'- cGCAGCGgaGCGGgugcucgGCGGcgacauccGCGACGAgGGCg -3'
miRNA:   3'- -UGUCGC--UGCC-------UGCCu-------UGUUGCUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.