Results 61 - 80 of 434 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 3' | -53.3 | NC_003521.1 | + | 116389 | 0.66 | 0.989067 |
Target: 5'- --cGCGACGuGGuggaacguugguUGGGuagcgGCGGCGAUGGCa -3' miRNA: 3'- uguCGCUGC-CU------------GCCU-----UGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 80475 | 0.66 | 0.988657 |
Target: 5'- gGCGGCGACGcccucgacGACGGAGgccaccgcgccgccCAcggcucCGAUGGCc -3' miRNA: 3'- -UGUCGCUGC--------CUGCCUU--------------GUu-----GCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 202112 | 0.66 | 0.990349 |
Target: 5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3' miRNA: 3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 143050 | 0.66 | 0.992459 |
Target: 5'- --cGCGACcuGGAUGGuggugguGGCGcCGGUGGCg -3' miRNA: 3'- uguCGCUG--CCUGCC-------UUGUuGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 179662 | 0.66 | 0.992559 |
Target: 5'- cACAGgGAagaauaUGGACGuGggUggUGGUGGUu -3' miRNA: 3'- -UGUCgCU------GCCUGC-CuuGuuGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 113357 | 0.66 | 0.992559 |
Target: 5'- -gGGgGACGGGCcgGGGGCGAgGAggagGGUu -3' miRNA: 3'- ugUCgCUGCCUG--CCUUGUUgCUa---CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 164370 | 0.66 | 0.991511 |
Target: 5'- cACAGCGACcuccagcGACGGuaaccccaacGACAACGGUcGCc -3' miRNA: 3'- -UGUCGCUGc------CUGCC----------UUGUUGCUAcCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 143096 | 0.66 | 0.9914 |
Target: 5'- cGCAGCcGCcgccggaGGAUGaGGACGACGAgucGGCc -3' miRNA: 3'- -UGUCGcUG-------CCUGC-CUUGUUGCUa--CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 102046 | 0.66 | 0.992559 |
Target: 5'- cGCAGC-ACGGcCGGGuugaGCAcuACGGuguUGGCg -3' miRNA: 3'- -UGUCGcUGCCuGCCU----UGU--UGCU---ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 66962 | 0.66 | 0.992559 |
Target: 5'- cGCuGCGGCaGGACGaGcGCAGCc-UGGCa -3' miRNA: 3'- -UGuCGCUG-CCUGC-CuUGUUGcuACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 167690 | 0.66 | 0.991175 |
Target: 5'- uGCGGUGACGacgcucguggaggaGGCGGcgguAGCAGCGGuagUGGUa -3' miRNA: 3'- -UGUCGCUGC--------------CUGCC----UUGUUGCU---ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 110418 | 0.66 | 0.990349 |
Target: 5'- uCAGCGugaGCGuGAgaaCGGAGCGGCGGuuguUGGUg -3' miRNA: 3'- uGUCGC---UGC-CU---GCCUUGUUGCU----ACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 233425 | 0.66 | 0.989067 |
Target: 5'- cACGGCGGC--GCGGA-CAGCGGUGcccaaGCa -3' miRNA: 3'- -UGUCGCUGccUGCCUuGUUGCUAC-----CG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 217332 | 0.66 | 0.990349 |
Target: 5'- uCAGC-ACGGugGcGGACGGCGGccGGUc -3' miRNA: 3'- uGUCGcUGCCugC-CUUGUUGCUa-CCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 146659 | 0.66 | 0.990349 |
Target: 5'- gACGGCGAggaGGACGGcAACGAagcCGAccGCa -3' miRNA: 3'- -UGUCGCUg--CCUGCC-UUGUU---GCUacCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 162772 | 0.66 | 0.989067 |
Target: 5'- cGCAcGCGugGuGgacuGCGuGGACGGCGAaGGCa -3' miRNA: 3'- -UGU-CGCugC-C----UGC-CUUGUUGCUaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 132427 | 0.66 | 0.990349 |
Target: 5'- uGCGGCGACGccgcUGG--UAGCGGUGGUg -3' miRNA: 3'- -UGUCGCUGCcu--GCCuuGUUGCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 125217 | 0.66 | 0.990828 |
Target: 5'- -uGGCGGCGGcaacGCGGGagaaaaagaaacgacGCGcACGggGGCg -3' miRNA: 3'- ugUCGCUGCC----UGCCU---------------UGU-UGCuaCCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 239203 | 0.66 | 0.990349 |
Target: 5'- cGCAGCuGGCgcagguaccgGGACGGGcuugucuuCGGgGAUGGCg -3' miRNA: 3'- -UGUCG-CUG----------CCUGCCUu-------GUUgCUACCG- -5' |
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13935 | 3' | -53.3 | NC_003521.1 | + | 123184 | 0.66 | 0.990349 |
Target: 5'- cGCGGCGcagucGCaGGCGGAACGACaccgGGUc -3' miRNA: 3'- -UGUCGC-----UGcCUGCCUUGUUGcua-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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