Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 143809 | 0.7 | 0.566465 |
Target: 5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3' miRNA: 3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 88772 | 0.7 | 0.566465 |
Target: 5'- aCGGCUGCgaGUCGCUG-CGCgUGCcGCUc -3' miRNA: 3'- -GCCGACGg-CAGUGGCaGCG-ACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 114933 | 0.7 | 0.556957 |
Target: 5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3' miRNA: 3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 118764 | 0.7 | 0.556957 |
Target: 5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3' miRNA: 3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166623 | 0.7 | 0.556957 |
Target: 5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3' miRNA: 3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 31263 | 0.71 | 0.551274 |
Target: 5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3' miRNA: 3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 67389 | 0.71 | 0.547496 |
Target: 5'- gCGGC--CCGcUGCUGUUGCUGCUGCUg -3' miRNA: 3'- -GCCGacGGCaGUGGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 133333 | 0.71 | 0.547496 |
Target: 5'- gCGGCUGCgaUgGCUGUgacUGCUGCUGCUg -3' miRNA: 3'- -GCCGACGgcAgUGGCA---GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 71217 | 0.71 | 0.547496 |
Target: 5'- uGGCU-CCGUCcggaGCCGcuccgcUCGCUGCUGUg -3' miRNA: 3'- gCCGAcGGCAG----UGGC------AGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 127046 | 0.71 | 0.547496 |
Target: 5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3' miRNA: 3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 45888 | 0.71 | 0.538085 |
Target: 5'- gCGGCggugGCCGUCugCGUCgGC-GCUGa- -3' miRNA: 3'- -GCCGa---CGGCAGugGCAG-CGaCGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 111438 | 0.71 | 0.528731 |
Target: 5'- gCGGC-GCCGUCGCCGggGCgGCcGCg -3' miRNA: 3'- -GCCGaCGGCAGUGGCagCGaCGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 116206 | 0.71 | 0.528731 |
Target: 5'- aGGgaGaCGUCGCCGUCGCcGCcGCUu -3' miRNA: 3'- gCCgaCgGCAGUGGCAGCGaCGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 60283 | 0.71 | 0.519438 |
Target: 5'- aGGUgagGCCGgUGCUGUCGC-GCUGCUg -3' miRNA: 3'- gCCGa--CGGCaGUGGCAGCGaCGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 149398 | 0.71 | 0.518512 |
Target: 5'- gGGCUucgugGCCGUgGCCGUCacggacgagcaguGCUGuCUGCUg -3' miRNA: 3'- gCCGA-----CGGCAgUGGCAG-------------CGAC-GACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 58995 | 0.71 | 0.515739 |
Target: 5'- uGGCUGCUG-CACCGcCGCcuggagacgguggGCUGCg -3' miRNA: 3'- gCCGACGGCaGUGGCaGCGa------------CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 28587 | 0.71 | 0.51021 |
Target: 5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3' miRNA: 3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 6669 | 0.71 | 0.501051 |
Target: 5'- gCGGCaagacCCGUCGCCGcCGCgguaGCUGCg -3' miRNA: 3'- -GCCGac---GGCAGUGGCaGCGa---CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 167572 | 0.71 | 0.491965 |
Target: 5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3' miRNA: 3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 155852 | 0.71 | 0.491965 |
Target: 5'- -uGCUGCUGcUC-UCGUUGCUGCUGCa -3' miRNA: 3'- gcCGACGGC-AGuGGCAGCGACGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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