Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 204727 | 0.69 | 0.624178 |
Target: 5'- gGGCUGgCGUgGCgCGgcuUCGCgUGCUGCUu -3' miRNA: 3'- gCCGACgGCAgUG-GC---AGCG-ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164818 | 0.69 | 0.624178 |
Target: 5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3' miRNA: 3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 43943 | 0.69 | 0.624178 |
Target: 5'- uCGGCga-CGaUCACCGgcgGCUGCUGCUc -3' miRNA: 3'- -GCCGacgGC-AGUGGCag-CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 187809 | 0.69 | 0.624178 |
Target: 5'- aCGGCUGCaCGaaGUCGUgGCUGUUGCg -3' miRNA: 3'- -GCCGACG-GCagUGGCAgCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 167293 | 0.69 | 0.614509 |
Target: 5'- aCGGaCUgGCCGUCAUCGUCGCcgGCa--- -3' miRNA: 3'- -GCC-GA-CGGCAGUGGCAGCGa-CGacga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 160282 | 0.69 | 0.614509 |
Target: 5'- uGGUaGCCGUCGucgucguacucgUCGUCGCUGCcGCc -3' miRNA: 3'- gCCGaCGGCAGU------------GGCAGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 193188 | 0.7 | 0.608713 |
Target: 5'- gGGCUcGCCGUCcugauggcccugacgGCCuUCGC-GCUGCUg -3' miRNA: 3'- gCCGA-CGGCAG---------------UGGcAGCGaCGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 56449 | 0.7 | 0.604853 |
Target: 5'- gCGGCUGaUgGUCAacCUGUCGC-GCUGCg -3' miRNA: 3'- -GCCGAC-GgCAGU--GGCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 63422 | 0.7 | 0.604853 |
Target: 5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3' miRNA: 3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 121030 | 0.7 | 0.604853 |
Target: 5'- uCGGCggcGCCGaCcUCGUCGCcGCUGCg -3' miRNA: 3'- -GCCGa--CGGCaGuGGCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 151862 | 0.7 | 0.604853 |
Target: 5'- gGcGCUGCagaucaGUCGCCGggCGCUguGCUGCa -3' miRNA: 3'- gC-CGACGg-----CAGUGGCa-GCGA--CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164024 | 0.7 | 0.604853 |
Target: 5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3' miRNA: 3'- gcCGACGGCaGUGGCA------GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 234322 | 0.7 | 0.603887 |
Target: 5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3' miRNA: 3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 153872 | 0.7 | 0.585599 |
Target: 5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3' miRNA: 3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 150248 | 0.7 | 0.585599 |
Target: 5'- gCGGgUGCgCGcCGCCcgUGCUGCUGCUg -3' miRNA: 3'- -GCCgACG-GCaGUGGcaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 201601 | 0.7 | 0.576014 |
Target: 5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3' miRNA: 3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 239714 | 0.7 | 0.576014 |
Target: 5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3' miRNA: 3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 17300 | 0.7 | 0.576014 |
Target: 5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3' miRNA: 3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 43871 | 0.7 | 0.576014 |
Target: 5'- cCGGCUcccggGCCGUCGCCcaCGCuaccggUGCUGCc -3' miRNA: 3'- -GCCGA-----CGGCAGUGGcaGCG------ACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 88772 | 0.7 | 0.566465 |
Target: 5'- aCGGCUGCgaGUCGCUG-CGCgUGCcGCUc -3' miRNA: 3'- -GCCGACGg-CAGUGGCaGCG-ACGaCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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