miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 117101 0.68 0.69163
Target:  5'- uCGGCgGCCGUCAgguCUGgaaacCGCUGCaGCa -3'
miRNA:   3'- -GCCGaCGGCAGU---GGCa----GCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 36270 0.68 0.69163
Target:  5'- gGGCcGCCaccuccGUCGCCGUCGCUGaccaaGCc -3'
miRNA:   3'- gCCGaCGG------CAGUGGCAGCGACga---CGa -5'
13935 5' -60.7 NC_003521.1 + 118543 0.68 0.69163
Target:  5'- aGuGCUGCUGcUACCGcCGCUGgUGCc -3'
miRNA:   3'- gC-CGACGGCaGUGGCaGCGACgACGa -5'
13935 5' -60.7 NC_003521.1 + 65988 0.68 0.69163
Target:  5'- uGGCcacGCCGgaCACCaaGUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCa-GUGG--CAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 166753 0.68 0.682068
Target:  5'- gCGGC-GCCc-CGCUGgauggCGCUGCUGCg -3'
miRNA:   3'- -GCCGaCGGcaGUGGCa----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 188763 0.68 0.682068
Target:  5'- cCGGCccCgCGUCAuCUGcCGCUGCUGCUc -3'
miRNA:   3'- -GCCGacG-GCAGU-GGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 219440 0.68 0.682068
Target:  5'- gGGCUcaGCCGcCACUGgaacaCGCUGCgGCg -3'
miRNA:   3'- gCCGA--CGGCaGUGGCa----GCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 85126 0.69 0.662841
Target:  5'- gGGCgGCCuUCuACCGUaCGgUGCUGCg -3'
miRNA:   3'- gCCGaCGGcAG-UGGCA-GCgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 52458 0.69 0.662841
Target:  5'- gCGGCUGUCGcguuaucccuuUCACCGUCGaaGCaacgGCg -3'
miRNA:   3'- -GCCGACGGC-----------AGUGGCAGCgaCGa---CGa -5'
13935 5' -60.7 NC_003521.1 + 195652 0.69 0.662841
Target:  5'- uCGGCgcggucaugGCC-UCGCCGUgGCgUGUUGCUg -3'
miRNA:   3'- -GCCGa--------CGGcAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 151086 0.69 0.662841
Target:  5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5'
13935 5' -60.7 NC_003521.1 + 134151 0.69 0.653191
Target:  5'- -uGCUGCUGUagCACCGaUUGCaGCUGCUc -3'
miRNA:   3'- gcCGACGGCA--GUGGC-AGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 163457 0.69 0.653191
Target:  5'- -cGCUGCCGccgccacCACCGUgucCGCUGCcGCUg -3'
miRNA:   3'- gcCGACGGCa------GUGGCA---GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 42612 0.69 0.653191
Target:  5'- aCGGCcGCCGgcggCGCCGUCGCcGCc--- -3'
miRNA:   3'- -GCCGaCGGCa---GUGGCAGCGaCGacga -5'
13935 5' -60.7 NC_003521.1 + 60585 0.69 0.653191
Target:  5'- cCGGCUGCaucagCGCCGUCuGCgcguaggcGCUGCa -3'
miRNA:   3'- -GCCGACGgca--GUGGCAG-CGa-------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 123496 0.69 0.643526
Target:  5'- cCGGCggGgUGUCGUCGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa-CgGCAGUGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 117165 0.69 0.643526
Target:  5'- cCGGCUcccuccaaGCCuaaccCGCCGUCGCUGCcGCc -3'
miRNA:   3'- -GCCGA--------CGGca---GUGGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 143199 0.69 0.643526
Target:  5'- -cGCUGaCCcUgACCGcCGCUGCUGCa -3'
miRNA:   3'- gcCGAC-GGcAgUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 126971 0.69 0.633853
Target:  5'- cCGcGCcGUCGUCGCCGgccgcccCGCUGCcGCUg -3'
miRNA:   3'- -GC-CGaCGGCAGUGGCa------GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 164818 0.69 0.624178
Target:  5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3'
miRNA:   3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.