miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 201601 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 43871 0.7 0.576014
Target:  5'- cCGGCUcccggGCCGUCGCCcaCGCuaccggUGCUGCc -3'
miRNA:   3'- -GCCGA-----CGGCAGUGGcaGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 166623 0.7 0.556957
Target:  5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3'
miRNA:   3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 238653 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 167572 0.71 0.491965
Target:  5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3'
miRNA:   3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 149398 0.71 0.518512
Target:  5'- gGGCUucgugGCCGUgGCCGUCacggacgagcaguGCUGuCUGCUg -3'
miRNA:   3'- gCCGA-----CGGCAgUGGCAG-------------CGAC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 116206 0.71 0.528731
Target:  5'- aGGgaGaCGUCGCCGUCGCcGCcGCUu -3'
miRNA:   3'- gCCgaCgGCAGUGGCAGCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 127046 0.71 0.547496
Target:  5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3'
miRNA:   3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 118764 0.7 0.556957
Target:  5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3'
miRNA:   3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 164567 0.76 0.295943
Target:  5'- -uGCUGCUGUUGuuGUgGCUGCUGCUg -3'
miRNA:   3'- gcCGACGGCAGUggCAgCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 37783 0.76 0.28317
Target:  5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3'
miRNA:   3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5'
13935 5' -60.7 NC_003521.1 + 187645 0.77 0.25894
Target:  5'- aGGCuguUGCCGcugcUCACCGUCGUcgggaUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGC----AGUGGCAGCG-----ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 69677 0.77 0.253153
Target:  5'- uGGUgcgcGCCGUCACCGUCccgcguCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGc-----GACGACGa -5'
13935 5' -60.7 NC_003521.1 + 235210 0.79 0.187281
Target:  5'- aGGCUggaGCCGUCGUCGuccUCGCUGCUGCUa -3'
miRNA:   3'- gCCGA---CGGCAGUGGC---AGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 210003 0.8 0.154667
Target:  5'- cCGGCUGCCGUgGCUGcCGCUGC-GCa -3'
miRNA:   3'- -GCCGACGGCAgUGGCaGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 142940 0.81 0.147357
Target:  5'- -aGCUGCUGcCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- gcCGACGGCaGUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 74961 0.84 0.08338
Target:  5'- -cGCUGCCGcggcgcCGCCGUCGCUGCUGCUu -3'
miRNA:   3'- gcCGACGGCa-----GUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 85685 0.66 0.825428
Target:  5'- cCGGCgggggGCUGggCACCGgaggC-CUGCUGCc -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa---GcGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.