miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 166796 0.76 0.270837
Target:  5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3'
miRNA:   3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 80027 0.77 0.253153
Target:  5'- gCGGCUGCUGUUucUUGUUGCUGCUGUUg -3'
miRNA:   3'- -GCCGACGGCAGu-GGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 122877 0.77 0.23643
Target:  5'- uGGUUgacgacGCCGUCACCGcucgCGUUGCUGCUa -3'
miRNA:   3'- gCCGA------CGGCAGUGGCa---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164452 0.81 0.136983
Target:  5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 168947 0.82 0.124194
Target:  5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 201792 0.73 0.405836
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 18850 0.72 0.456423
Target:  5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGcagcgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 43871 0.7 0.576014
Target:  5'- cCGGCUcccggGCCGUCGCCcaCGCuaccggUGCUGCc -3'
miRNA:   3'- -GCCGA-----CGGCAGUGGcaGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 166623 0.7 0.556957
Target:  5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3'
miRNA:   3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 118764 0.7 0.556957
Target:  5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3'
miRNA:   3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 127046 0.71 0.547496
Target:  5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3'
miRNA:   3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 116206 0.71 0.528731
Target:  5'- aGGgaGaCGUCGCCGUCGCcGCcGCUu -3'
miRNA:   3'- gCCgaCgGCAGUGGCAGCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 149398 0.71 0.518512
Target:  5'- gGGCUucgugGCCGUgGCCGUCacggacgagcaguGCUGuCUGCUg -3'
miRNA:   3'- gCCGA-----CGGCAgUGGCAG-------------CGAC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 167572 0.71 0.491965
Target:  5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3'
miRNA:   3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 238653 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 57842 0.72 0.474027
Target:  5'- cCGGUgacGCCGaaCGCCGUCGCUGCUa-- -3'
miRNA:   3'- -GCCGa--CGGCa-GUGGCAGCGACGAcga -5'
13935 5' -60.7 NC_003521.1 + 30398 0.72 0.474027
Target:  5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3'
miRNA:   3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 18747 0.72 0.474027
Target:  5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3'
miRNA:   3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.