miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 65988 0.68 0.69163
Target:  5'- uGGCcacGCCGgaCACCaaGUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCa-GUGG--CAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 67389 0.71 0.547496
Target:  5'- gCGGC--CCGcUGCUGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGacGGCaGUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 69563 0.68 0.720019
Target:  5'- aCGGC-GCCGccCugUGUCGggGCUGCg -3'
miRNA:   3'- -GCCGaCGGCa-GugGCAGCgaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 69677 0.77 0.253153
Target:  5'- uGGUgcgcGCCGUCACCGUCccgcguCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGc-----GACGACGa -5'
13935 5' -60.7 NC_003521.1 + 70588 0.67 0.756892
Target:  5'- -uGCUGgacggCGUCACCGccUCGCUGCUGg- -3'
miRNA:   3'- gcCGACg----GCAGUGGC--AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 71217 0.71 0.547496
Target:  5'- uGGCU-CCGUCcggaGCCGcuccgcUCGCUGCUGUg -3'
miRNA:   3'- gCCGAcGGCAG----UGGC------AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 73099 0.72 0.439177
Target:  5'- cCGcGCccagGCCGUCGCgGUgagccUGCUGCUGCUg -3'
miRNA:   3'- -GC-CGa---CGGCAGUGgCA-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 74457 0.66 0.783541
Target:  5'- aCGGCgucggGCCGcgCGCCGggCGCcGCgGCg -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa-GCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 74753 0.66 0.79219
Target:  5'- cCGaCUGgCGUCGCCGUCGaCgugGCUGg- -3'
miRNA:   3'- -GCcGACgGCAGUGGCAGC-Ga--CGACga -5'
13935 5' -60.7 NC_003521.1 + 74961 0.84 0.08338
Target:  5'- -cGCUGCCGcggcgcCGCCGUCGCUGCUGCUu -3'
miRNA:   3'- gcCGACGGCa-----GUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 75812 0.66 0.809096
Target:  5'- uGGCguaGCCGcCGCCGgCGCcGCUGa- -3'
miRNA:   3'- gCCGa--CGGCaGUGGCaGCGaCGACga -5'
13935 5' -60.7 NC_003521.1 + 77696 0.67 0.764094
Target:  5'- aCGGCggcauccucucgGCCGUgGCCccGUCGUcgGCUGCc -3'
miRNA:   3'- -GCCGa-----------CGGCAgUGG--CAGCGa-CGACGa -5'
13935 5' -60.7 NC_003521.1 + 79549 0.68 0.710613
Target:  5'- -cGCUGCUGcuacuguugcCGCCGUCGCUGCU-CUg -3'
miRNA:   3'- gcCGACGGCa---------GUGGCAGCGACGAcGA- -5'
13935 5' -60.7 NC_003521.1 + 79634 0.73 0.405836
Target:  5'- gCGGC-GCC-UCGgCGUCGuCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGcAGUgGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 80027 0.77 0.253153
Target:  5'- gCGGCUGCUGUUucUUGUUGCUGCUGUUg -3'
miRNA:   3'- -GCCGACGGCAGu-GGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 81939 0.66 0.79219
Target:  5'- gGGCgGUgGUCACCGUCaccauGCaguuaagGCUGCa -3'
miRNA:   3'- gCCGaCGgCAGUGGCAG-----CGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 85126 0.69 0.662841
Target:  5'- gGGCgGCCuUCuACCGUaCGgUGCUGCg -3'
miRNA:   3'- gCCGaCGGcAG-UGGCA-GCgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 85685 0.66 0.825428
Target:  5'- cCGGCgggggGCUGggCACCGgaggC-CUGCUGCc -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa---GcGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 88772 0.7 0.566465
Target:  5'- aCGGCUGCgaGUCGCUG-CGCgUGCcGCUc -3'
miRNA:   3'- -GCCGACGg-CAGUGGCaGCG-ACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 96771 0.67 0.729358
Target:  5'- aCGGUcGCCGUCGCCGcCgGCaGCaGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaG-CGaCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.