miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 234087 0.67 0.738622
Target:  5'- aCGGCgGUgGaUACCGUacuugggcuggCGCUGCUGCa -3'
miRNA:   3'- -GCCGaCGgCaGUGGCA-----------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 220841 0.67 0.729358
Target:  5'- aCGGCUguuuucauaaGCCGUCGCCGguaCGCUcaGCggagUGCg -3'
miRNA:   3'- -GCCGA----------CGGCAGUGGCa--GCGA--CG----ACGa -5'
13935 5' -60.7 NC_003521.1 + 160776 0.67 0.738622
Target:  5'- aGGCUGCCGcccccuccUC-CCGcCGCgGuCUGCUg -3'
miRNA:   3'- gCCGACGGC--------AGuGGCaGCGaC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 119965 0.67 0.738622
Target:  5'- aGGCUGgUGgaCGCCGUggaGCUGCUGUc -3'
miRNA:   3'- gCCGACgGCa-GUGGCAg--CGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 28413 0.67 0.765884
Target:  5'- gGGCaugGUCGcCGCCGUCGCcaggGCaagGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGa---CGa--CGA- -5'
13935 5' -60.7 NC_003521.1 + 164636 0.67 0.747802
Target:  5'- gGGUUaCCGUCGCUggagGUCGCUGUgGCg -3'
miRNA:   3'- gCCGAcGGCAGUGG----CAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 166935 0.67 0.755082
Target:  5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3'
miRNA:   3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 153372 0.67 0.756892
Target:  5'- -uGCUGCCGUCGCgCG-CGCccgGCgGCg -3'
miRNA:   3'- gcCGACGGCAGUG-GCaGCGa--CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 70588 0.67 0.756892
Target:  5'- -uGCUGgacggCGUCACCGccUCGCUGCUGg- -3'
miRNA:   3'- gcCGACg----GCAGUGGC--AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 166753 0.68 0.682068
Target:  5'- gCGGC-GCCc-CGCUGgauggCGCUGCUGCg -3'
miRNA:   3'- -GCCGaCGGcaGUGGCa----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 36270 0.68 0.69163
Target:  5'- gGGCcGCCaccuccGUCGCCGUCGCUGaccaaGCc -3'
miRNA:   3'- gCCGaCGG------CAGUGGCAGCGACga---CGa -5'
13935 5' -60.7 NC_003521.1 + 127027 0.68 0.701147
Target:  5'- gGGcCUGCCGgacuUCA-CGUCGCUGCaguucgUGCUg -3'
miRNA:   3'- gCC-GACGGC----AGUgGCAGCGACG------ACGA- -5'
13935 5' -60.7 NC_003521.1 + 218343 0.68 0.701147
Target:  5'- cCGGC-GCCGcCGCC-UCGCUG-UGCUu -3'
miRNA:   3'- -GCCGaCGGCaGUGGcAGCGACgACGA- -5'
13935 5' -60.7 NC_003521.1 + 117101 0.68 0.69163
Target:  5'- uCGGCgGCCGUCAgguCUGgaaacCGCUGCaGCa -3'
miRNA:   3'- -GCCGaCGGCAGU---GGCa----GCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 28534 0.68 0.710613
Target:  5'- uGGCUGCUGUCAUCGcCGCcGUguuccucucgGCg -3'
miRNA:   3'- gCCGACGGCAGUGGCaGCGaCGa---------CGa -5'
13935 5' -60.7 NC_003521.1 + 11439 0.68 0.710613
Target:  5'- gGuGCUGCC-UCACCGggaucauccUCgGCUGCUGUUg -3'
miRNA:   3'- gC-CGACGGcAGUGGC---------AG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 191401 0.68 0.710613
Target:  5'- gCGGC-GCUGUCGCCGUCaGC--CUGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAG-CGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 124146 0.68 0.710613
Target:  5'- -cGCUGCCucCGCCGcCGCUGCcgUGCa -3'
miRNA:   3'- gcCGACGGcaGUGGCaGCGACG--ACGa -5'
13935 5' -60.7 NC_003521.1 + 79549 0.68 0.710613
Target:  5'- -cGCUGCUGcuacuguugcCGCCGUCGCUGCU-CUg -3'
miRNA:   3'- gcCGACGGCa---------GUGGCAGCGACGAcGA- -5'
13935 5' -60.7 NC_003521.1 + 69563 0.68 0.720019
Target:  5'- aCGGC-GCCGccCugUGUCGggGCUGCg -3'
miRNA:   3'- -GCCGaCGGCa-GugGCAGCgaCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.