miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 188763 0.68 0.682068
Target:  5'- cCGGCccCgCGUCAuCUGcCGCUGCUGCUc -3'
miRNA:   3'- -GCCGacG-GCAGU-GGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 38075 0.68 0.69163
Target:  5'- gGGUUGUgGUgGCCGUCGCUG--GCa -3'
miRNA:   3'- gCCGACGgCAgUGGCAGCGACgaCGa -5'
13935 5' -60.7 NC_003521.1 + 134516 0.68 0.701147
Target:  5'- aGGCgaugcgcacgGCCGcCGCCugGUUGCUGUUGCc -3'
miRNA:   3'- gCCGa---------CGGCaGUGG--CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 223836 0.68 0.701147
Target:  5'- gGGCgccUGCUGUCcCUG-CgGCUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGCAGuGGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 79549 0.68 0.710613
Target:  5'- -cGCUGCUGcuacuguugcCGCCGUCGCUGCU-CUg -3'
miRNA:   3'- gcCGACGGCa---------GUGGCAGCGACGAcGA- -5'
13935 5' -60.7 NC_003521.1 + 124146 0.68 0.710613
Target:  5'- -cGCUGCCucCGCCGcCGCUGCcgUGCa -3'
miRNA:   3'- gcCGACGGcaGUGGCaGCGACG--ACGa -5'
13935 5' -60.7 NC_003521.1 + 69563 0.68 0.720019
Target:  5'- aCGGC-GCCGccCugUGUCGggGCUGCg -3'
miRNA:   3'- -GCCGaCGGCa-GugGCAGCgaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 117165 0.69 0.643526
Target:  5'- cCGGCUcccuccaaGCCuaaccCGCCGUCGCUGCcGCc -3'
miRNA:   3'- -GCCGA--------CGGca---GUGGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 60585 0.69 0.653191
Target:  5'- cCGGCUGCaucagCGCCGUCuGCgcguaggcGCUGCa -3'
miRNA:   3'- -GCCGACGgca--GUGGCAG-CGa-------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 123496 0.69 0.643526
Target:  5'- cCGGCggGgUGUCGUCGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa-CgGCAGUGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 163457 0.69 0.653191
Target:  5'- -cGCUGCCGccgccacCACCGUgucCGCUGCcGCUg -3'
miRNA:   3'- gcCGACGGCa------GUGGCA---GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 195652 0.69 0.662841
Target:  5'- uCGGCgcggucaugGCC-UCGCCGUgGCgUGUUGCUg -3'
miRNA:   3'- -GCCGa--------CGGcAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 42612 0.69 0.653191
Target:  5'- aCGGCcGCCGgcggCGCCGUCGCcGCc--- -3'
miRNA:   3'- -GCCGaCGGCa---GUGGCAGCGaCGacga -5'
13935 5' -60.7 NC_003521.1 + 134151 0.69 0.653191
Target:  5'- -uGCUGCUGUagCACCGaUUGCaGCUGCUc -3'
miRNA:   3'- gcCGACGGCA--GUGGC-AGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 151086 0.69 0.662841
Target:  5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5'
13935 5' -60.7 NC_003521.1 + 164818 0.69 0.624178
Target:  5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3'
miRNA:   3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 192662 0.69 0.624178
Target:  5'- aGGC-GCUGgaacagCACCGUCaGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCa-----GUGGCAG-CGACGACga -5'
13935 5' -60.7 NC_003521.1 + 126971 0.69 0.633853
Target:  5'- cCGcGCcGUCGUCGCCGgccgcccCGCUGCcGCUg -3'
miRNA:   3'- -GC-CGaCGGCAGUGGCa------GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 52458 0.69 0.662841
Target:  5'- gCGGCUGUCGcguuaucccuuUCACCGUCGaaGCaacgGCg -3'
miRNA:   3'- -GCCGACGGC-----------AGUGGCAGCgaCGa---CGa -5'
13935 5' -60.7 NC_003521.1 + 204727 0.69 0.624178
Target:  5'- gGGCUGgCGUgGCgCGgcuUCGCgUGCUGCUu -3'
miRNA:   3'- gCCGACgGCAgUG-GC---AGCG-ACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.