miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 234322 0.7 0.603887
Target:  5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3'
miRNA:   3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5'
13935 5' -60.7 NC_003521.1 + 56449 0.7 0.604853
Target:  5'- gCGGCUGaUgGUCAacCUGUCGC-GCUGCg -3'
miRNA:   3'- -GCCGAC-GgCAGU--GGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 151862 0.7 0.604853
Target:  5'- gGcGCUGCagaucaGUCGCCGggCGCUguGCUGCa -3'
miRNA:   3'- gC-CGACGg-----CAGUGGCa-GCGA--CGACGa -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 63422 0.7 0.604853
Target:  5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3'
miRNA:   3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164024 0.7 0.604853
Target:  5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3'
miRNA:   3'- gcCGACGGCaGUGGCA------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 143809 0.7 0.566465
Target:  5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3'
miRNA:   3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5'
13935 5' -60.7 NC_003521.1 + 153872 0.7 0.585599
Target:  5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3'
miRNA:   3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 239714 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 150248 0.7 0.585599
Target:  5'- gCGGgUGCgCGcCGCCcgUGCUGCUGCUg -3'
miRNA:   3'- -GCCgACG-GCaGUGGcaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 17300 0.7 0.576014
Target:  5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3'
miRNA:   3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 88772 0.7 0.566465
Target:  5'- aCGGCUGCgaGUCGCUG-CGCgUGCcGCUc -3'
miRNA:   3'- -GCCGACGg-CAGUGGCaGCG-ACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 121030 0.7 0.604853
Target:  5'- uCGGCggcGCCGaCcUCGUCGCcGCUGCg -3'
miRNA:   3'- -GCCGa--CGGCaGuGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 160282 0.69 0.614509
Target:  5'- uGGUaGCCGUCGucgucguacucgUCGUCGCUGCcGCc -3'
miRNA:   3'- gCCGaCGGCAGU------------GGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 43943 0.69 0.624178
Target:  5'- uCGGCga-CGaUCACCGgcgGCUGCUGCUc -3'
miRNA:   3'- -GCCGacgGC-AGUGGCag-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 123496 0.69 0.643526
Target:  5'- cCGGCggGgUGUCGUCGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa-CgGCAGUGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 42612 0.69 0.653191
Target:  5'- aCGGCcGCCGgcggCGCCGUCGCcGCc--- -3'
miRNA:   3'- -GCCGaCGGCa---GUGGCAGCGaCGacga -5'
13935 5' -60.7 NC_003521.1 + 151086 0.69 0.662841
Target:  5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5'
13935 5' -60.7 NC_003521.1 + 52458 0.69 0.662841
Target:  5'- gCGGCUGUCGcguuaucccuuUCACCGUCGaaGCaacgGCg -3'
miRNA:   3'- -GCCGACGGC-----------AGUGGCAGCgaCGa---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.