miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 167572 0.71 0.491965
Target:  5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3'
miRNA:   3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 155852 0.71 0.491965
Target:  5'- -uGCUGCUGcUC-UCGUUGCUGCUGCa -3'
miRNA:   3'- gcCGACGGC-AGuGGCAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 6669 0.71 0.501051
Target:  5'- gCGGCaagacCCGUCGCCGcCGCgguaGCUGCg -3'
miRNA:   3'- -GCCGac---GGCAGUGGCaGCGa---CGACGa -5'
13935 5' -60.7 NC_003521.1 + 28587 0.71 0.51021
Target:  5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3'
miRNA:   3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 58995 0.71 0.515739
Target:  5'- uGGCUGCUG-CACCGcCGCcuggagacgguggGCUGCg -3'
miRNA:   3'- gCCGACGGCaGUGGCaGCGa------------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 149398 0.71 0.518512
Target:  5'- gGGCUucgugGCCGUgGCCGUCacggacgagcaguGCUGuCUGCUg -3'
miRNA:   3'- gCCGA-----CGGCAgUGGCAG-------------CGAC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 60283 0.71 0.519438
Target:  5'- aGGUgagGCCGgUGCUGUCGC-GCUGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 116206 0.71 0.528731
Target:  5'- aGGgaGaCGUCGCCGUCGCcGCcGCUu -3'
miRNA:   3'- gCCgaCgGCAGUGGCAGCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 111438 0.71 0.528731
Target:  5'- gCGGC-GCCGUCGCCGggGCgGCcGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCagCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 45888 0.71 0.538085
Target:  5'- gCGGCggugGCCGUCugCGUCgGC-GCUGa- -3'
miRNA:   3'- -GCCGa---CGGCAGugGCAG-CGaCGACga -5'
13935 5' -60.7 NC_003521.1 + 127046 0.71 0.547496
Target:  5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3'
miRNA:   3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 133333 0.71 0.547496
Target:  5'- gCGGCUGCgaUgGCUGUgacUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGgcAgUGGCA---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 71217 0.71 0.547496
Target:  5'- uGGCU-CCGUCcggaGCCGcuccgcUCGCUGCUGUg -3'
miRNA:   3'- gCCGAcGGCAG----UGGC------AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 67389 0.71 0.547496
Target:  5'- gCGGC--CCGcUGCUGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGacGGCaGUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 31263 0.71 0.551274
Target:  5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 166623 0.7 0.556957
Target:  5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3'
miRNA:   3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 118764 0.7 0.556957
Target:  5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3'
miRNA:   3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 143809 0.7 0.566465
Target:  5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3'
miRNA:   3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.