miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 42275 0.73 0.389773
Target:  5'- gCGGCgucUGUCGUgcCGCCGUguUGCUGCUGCg -3'
miRNA:   3'- -GCCG---ACGGCA--GUGGCA--GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 149808 0.73 0.397752
Target:  5'- aCGGCcgGCCGUgACCGaC-CUGCUGCa -3'
miRNA:   3'- -GCCGa-CGGCAgUGGCaGcGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 239523 0.73 0.405835
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 164487 0.73 0.405836
Target:  5'- -cGCaGCCGUCACCGUCGCcuccGCaGCUg -3'
miRNA:   3'- gcCGaCGGCAGUGGCAGCGa---CGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 79634 0.73 0.405836
Target:  5'- gCGGC-GCC-UCGgCGUCGuCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGcAGUgGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 201792 0.73 0.405836
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 216887 0.73 0.414022
Target:  5'- uCGGCgcgcCCGcCuACCGUCGaCUGCUGCUg -3'
miRNA:   3'- -GCCGac--GGCaG-UGGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 219757 0.73 0.414022
Target:  5'- -aGCUGaCCGUCACCGU-GCUGCUcaGCg -3'
miRNA:   3'- gcCGAC-GGCAGUGGCAgCGACGA--CGa -5'
13935 5' -60.7 NC_003521.1 + 106070 0.73 0.414022
Target:  5'- uGGCUGCCGggCACCGUgGC--CUGCg -3'
miRNA:   3'- gCCGACGGCa-GUGGCAgCGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 203978 0.73 0.430694
Target:  5'- cCGGCUGCUGcUGCCGUCGCUaCUgGCg -3'
miRNA:   3'- -GCCGACGGCaGUGGCAGCGAcGA-CGa -5'
13935 5' -60.7 NC_003521.1 + 73099 0.72 0.439177
Target:  5'- cCGcGCccagGCCGUCGCgGUgagccUGCUGCUGCUg -3'
miRNA:   3'- -GC-CGa---CGGCAGUGgCA-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 218707 0.72 0.453813
Target:  5'- cCGGCcauguccuccguggUGCCGcCGCUGUCGCuggccaUGCUGCg -3'
miRNA:   3'- -GCCG--------------ACGGCaGUGGCAGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 18850 0.72 0.456423
Target:  5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGcagcgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 103042 0.72 0.456423
Target:  5'- cCGGC-GCCGUCAUCGcgcagcCGCUGCcGCUc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCa-----GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 57842 0.72 0.474027
Target:  5'- cCGGUgacGCCGaaCGCCGUCGCUGCUa-- -3'
miRNA:   3'- -GCCGa--CGGCa-GUGGCAGCGACGAcga -5'
13935 5' -60.7 NC_003521.1 + 30398 0.72 0.474027
Target:  5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3'
miRNA:   3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 18747 0.72 0.474027
Target:  5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3'
miRNA:   3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 31351 0.72 0.474027
Target:  5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3'
miRNA:   3'- -GCCGaCGGCaGUGGCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 238653 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 202662 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.