miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 53647 0.66 0.79219
Target:  5'- aGGCggGCCGUCuCCGcaCGUUGCUuccGCUc -3'
miRNA:   3'- gCCGa-CGGCAGuGGCa-GCGACGA---CGA- -5'
13935 5' -60.7 NC_003521.1 + 113344 0.66 0.79219
Target:  5'- cCGGCgGCCGUCugCGccUCGUagcccggaaggUGCUGg- -3'
miRNA:   3'- -GCCGaCGGCAGugGC--AGCG-----------ACGACga -5'
13935 5' -60.7 NC_003521.1 + 100262 0.66 0.783541
Target:  5'- aCGaGCUGUCGcCGCCGcCGCcGCaGCa -3'
miRNA:   3'- -GC-CGACGGCaGUGGCaGCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 97064 0.66 0.783541
Target:  5'- aCGcGCgaucgUGCCcguagCGCCGcCGCUGCUGCc -3'
miRNA:   3'- -GC-CG-----ACGGca---GUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 74457 0.66 0.783541
Target:  5'- aCGGCgucggGCCGcgCGCCGggCGCcGCgGCg -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa-GCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 233186 0.67 0.778292
Target:  5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 64149 0.67 0.774769
Target:  5'- gGGCaacGCCGUCAaCGaguacUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCAGUgGC-----AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 223637 0.67 0.774769
Target:  5'- gGGC-GCCG-CGauGUCGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCaGUggCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 50278 0.67 0.765884
Target:  5'- -uGCaGCCGgguCCGcCGCUGCUGCc -3'
miRNA:   3'- gcCGaCGGCaguGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 113499 0.67 0.765884
Target:  5'- uGGCccucaugGCCGUCACCGagagcgugCGCaGCgGCUg -3'
miRNA:   3'- gCCGa------CGGCAGUGGCa-------GCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 54122 0.67 0.765884
Target:  5'- cCGGa-GCCGUCGUCGU-GCaUGCUGCUa -3'
miRNA:   3'- -GCCgaCGGCAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 28413 0.67 0.765884
Target:  5'- gGGCaugGUCGcCGCCGUCGCcaggGCaagGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGa---CGa--CGA- -5'
13935 5' -60.7 NC_003521.1 + 77696 0.67 0.764094
Target:  5'- aCGGCggcauccucucgGCCGUgGCCccGUCGUcgGCUGCc -3'
miRNA:   3'- -GCCGa-----------CGGCAgUGG--CAGCGa-CGACGa -5'
13935 5' -60.7 NC_003521.1 + 223780 0.67 0.756892
Target:  5'- uCGGC-GCCGUUACCGcCGUggGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaGCGa-CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 143161 0.67 0.756892
Target:  5'- cCGGCUgauggcGCCGcUCuccaagggAUCGcCGCUGCUGCg -3'
miRNA:   3'- -GCCGA------CGGC-AG--------UGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 153372 0.67 0.756892
Target:  5'- -uGCUGCCGUCGCgCG-CGCccgGCgGCg -3'
miRNA:   3'- gcCGACGGCAGUG-GCaGCGa--CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 70588 0.67 0.756892
Target:  5'- -uGCUGgacggCGUCACCGccUCGCUGCUGg- -3'
miRNA:   3'- gcCGACg----GCAGUGGC--AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 166935 0.67 0.755082
Target:  5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3'
miRNA:   3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164636 0.67 0.747802
Target:  5'- gGGUUaCCGUCGCUggagGUCGCUGUgGCg -3'
miRNA:   3'- gCCGAcGGCAGUGG----CAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 192480 0.67 0.738622
Target:  5'- aCGGCggucgGCUGaUCACCGUguccaCGCUGguaCUGCUc -3'
miRNA:   3'- -GCCGa----CGGC-AGUGGCA-----GCGAC---GACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.