miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 164609 0.66 0.825428
Target:  5'- nCGGUaggaGCUGUCGCCGggaCGCgugGCgGCUg -3'
miRNA:   3'- -GCCGa---CGGCAGUGGCa--GCGa--CGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 85685 0.66 0.825428
Target:  5'- cCGGCgggggGCUGggCACCGgaggC-CUGCUGCc -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa---GcGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 122192 0.66 0.824626
Target:  5'- gGGCUGgCGaCGCCcUCGCgacuccaUGCUGCc -3'
miRNA:   3'- gCCGACgGCaGUGGcAGCG-------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 55506 0.66 0.817337
Target:  5'- gGGCUcGCCGgcgaGCCGcUCGggGCUGUa -3'
miRNA:   3'- gCCGA-CGGCag--UGGC-AGCgaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 196995 0.66 0.817337
Target:  5'- aGGCgccGCCGccacCACCGUCGCcGCcgGUg -3'
miRNA:   3'- gCCGa--CGGCa---GUGGCAGCGaCGa-CGa -5'
13935 5' -60.7 NC_003521.1 + 143597 0.66 0.817337
Target:  5'- gCGGaCUGCUGacggcCACCG--GCUGCUGCc -3'
miRNA:   3'- -GCC-GACGGCa----GUGGCagCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 120328 0.66 0.809096
Target:  5'- uCGaGacaUGCgGUgGCCGcUGCUGCUGCUu -3'
miRNA:   3'- -GC-Cg--ACGgCAgUGGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 75812 0.66 0.809096
Target:  5'- uGGCguaGCCGcCGCCGgCGCcGCUGa- -3'
miRNA:   3'- gCCGa--CGGCaGUGGCaGCGaCGACga -5'
13935 5' -60.7 NC_003521.1 + 238988 0.66 0.808264
Target:  5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3'
miRNA:   3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 43955 0.66 0.808264
Target:  5'- gGGUcGuuGUCGUCGUCuccuccuGCUGCUGCUc -3'
miRNA:   3'- gCCGaCggCAGUGGCAG-------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 202327 0.66 0.808264
Target:  5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3'
miRNA:   3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 142276 0.66 0.800711
Target:  5'- gGGCUcggGCUGggaccCGCCGcCGCUGCaGCg -3'
miRNA:   3'- gCCGA---CGGCa----GUGGCaGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 36811 0.66 0.798169
Target:  5'- gGGCagGCCGUgAucacgcgccacgggCCGgCGCUGCUGUg -3'
miRNA:   3'- gCCGa-CGGCAgU--------------GGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 113344 0.66 0.79219
Target:  5'- cCGGCgGCCGUCugCGccUCGUagcccggaaggUGCUGg- -3'
miRNA:   3'- -GCCGaCGGCAGugGC--AGCG-----------ACGACga -5'
13935 5' -60.7 NC_003521.1 + 41770 0.66 0.79219
Target:  5'- -cGCUGCCGUUACUgguGUCGCUG--GCg -3'
miRNA:   3'- gcCGACGGCAGUGG---CAGCGACgaCGa -5'
13935 5' -60.7 NC_003521.1 + 218433 0.66 0.79219
Target:  5'- gGGUcGUCGUCACCuacuaccUGCUGCUGUa -3'
miRNA:   3'- gCCGaCGGCAGUGGca-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 56019 0.66 0.79219
Target:  5'- -cGCcgGCCG-CGCCuGUCGCUGCcGCc -3'
miRNA:   3'- gcCGa-CGGCaGUGG-CAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 105515 0.66 0.79219
Target:  5'- uGGgUGCCGUCacACCGUCaggaUGCUGg- -3'
miRNA:   3'- gCCgACGGCAG--UGGCAGcg--ACGACga -5'
13935 5' -60.7 NC_003521.1 + 81939 0.66 0.79219
Target:  5'- gGGCgGUgGUCACCGUCaccauGCaguuaagGCUGCa -3'
miRNA:   3'- gCCGaCGgCAGUGGCAG-----CGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 64532 0.66 0.79219
Target:  5'- uGcGCgacgacGCCGaCGCcCGUCuGCUGCUGCUc -3'
miRNA:   3'- gC-CGa-----CGGCaGUG-GCAG-CGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.