Results 1 - 20 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 2724 | 0.74 | 0.366473 |
Target: 5'- gGGagcGCCGUCACCGccucgcuggcUgGCUGCUGCUa -3' miRNA: 3'- gCCga-CGGCAGUGGC----------AgCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 5789 | 1.08 | 0.002077 |
Target: 5'- cCGGCUGCCGUCACCGUCGCUGCUGCUa -3' miRNA: 3'- -GCCGACGGCAGUGGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 6669 | 0.71 | 0.501051 |
Target: 5'- gCGGCaagacCCGUCGCCGcCGCgguaGCUGCg -3' miRNA: 3'- -GCCGac---GGCAGUGGCaGCGa---CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 11439 | 0.68 | 0.710613 |
Target: 5'- gGuGCUGCC-UCACCGggaucauccUCgGCUGCUGUUg -3' miRNA: 3'- gC-CGACGGcAGUGGC---------AG-CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 17300 | 0.7 | 0.576014 |
Target: 5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3' miRNA: 3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 18747 | 0.72 | 0.474027 |
Target: 5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3' miRNA: 3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 18850 | 0.72 | 0.456423 |
Target: 5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3' miRNA: 3'- -GCCGACGGCAGUGGcagcgACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 28413 | 0.67 | 0.765884 |
Target: 5'- gGGCaugGUCGcCGCCGUCGCcaggGCaagGCUg -3' miRNA: 3'- gCCGa--CGGCaGUGGCAGCGa---CGa--CGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 28534 | 0.68 | 0.710613 |
Target: 5'- uGGCUGCUGUCAUCGcCGCcGUguuccucucgGCg -3' miRNA: 3'- gCCGACGGCAGUGGCaGCGaCGa---------CGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 28587 | 0.71 | 0.51021 |
Target: 5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3' miRNA: 3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 30221 | 0.76 | 0.295943 |
Target: 5'- uCGGCcgGCCGUUGgCGUCGC-GCUGCa -3' miRNA: 3'- -GCCGa-CGGCAGUgGCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 30398 | 0.72 | 0.474027 |
Target: 5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3' miRNA: 3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 31263 | 0.71 | 0.551274 |
Target: 5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3' miRNA: 3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 31351 | 0.72 | 0.474027 |
Target: 5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3' miRNA: 3'- -GCCGaCGGCaGUGGCAGCGACGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 36270 | 0.68 | 0.69163 |
Target: 5'- gGGCcGCCaccuccGUCGCCGUCGCUGaccaaGCc -3' miRNA: 3'- gCCGaCGG------CAGUGGCAGCGACga---CGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 36811 | 0.66 | 0.798169 |
Target: 5'- gGGCagGCCGUgAucacgcgccacgggCCGgCGCUGCUGUg -3' miRNA: 3'- gCCGa-CGGCAgU--------------GGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 37783 | 0.76 | 0.28317 |
Target: 5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3' miRNA: 3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 38075 | 0.68 | 0.69163 |
Target: 5'- gGGUUGUgGUgGCCGUCGCUG--GCa -3' miRNA: 3'- gCCGACGgCAgUGGCAGCGACgaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 41770 | 0.66 | 0.79219 |
Target: 5'- -cGCUGCCGUUACUgguGUCGCUG--GCg -3' miRNA: 3'- gcCGACGGCAGUGG---CAGCGACgaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 42275 | 0.73 | 0.389773 |
Target: 5'- gCGGCgucUGUCGUgcCGCCGUguUGCUGCUGCg -3' miRNA: 3'- -GCCG---ACGGCA--GUGGCA--GCGACGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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