miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 2724 0.74 0.366473
Target:  5'- gGGagcGCCGUCACCGccucgcuggcUgGCUGCUGCUa -3'
miRNA:   3'- gCCga-CGGCAGUGGC----------AgCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 5789 1.08 0.002077
Target:  5'- cCGGCUGCCGUCACCGUCGCUGCUGCUa -3'
miRNA:   3'- -GCCGACGGCAGUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 6669 0.71 0.501051
Target:  5'- gCGGCaagacCCGUCGCCGcCGCgguaGCUGCg -3'
miRNA:   3'- -GCCGac---GGCAGUGGCaGCGa---CGACGa -5'
13935 5' -60.7 NC_003521.1 + 11439 0.68 0.710613
Target:  5'- gGuGCUGCC-UCACCGggaucauccUCgGCUGCUGUUg -3'
miRNA:   3'- gC-CGACGGcAGUGGC---------AG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 17300 0.7 0.576014
Target:  5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3'
miRNA:   3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 18747 0.72 0.474027
Target:  5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3'
miRNA:   3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 18850 0.72 0.456423
Target:  5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGcagcgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 28413 0.67 0.765884
Target:  5'- gGGCaugGUCGcCGCCGUCGCcaggGCaagGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGa---CGa--CGA- -5'
13935 5' -60.7 NC_003521.1 + 28534 0.68 0.710613
Target:  5'- uGGCUGCUGUCAUCGcCGCcGUguuccucucgGCg -3'
miRNA:   3'- gCCGACGGCAGUGGCaGCGaCGa---------CGa -5'
13935 5' -60.7 NC_003521.1 + 28587 0.71 0.51021
Target:  5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3'
miRNA:   3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 30221 0.76 0.295943
Target:  5'- uCGGCcgGCCGUUGgCGUCGC-GCUGCa -3'
miRNA:   3'- -GCCGa-CGGCAGUgGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 30398 0.72 0.474027
Target:  5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3'
miRNA:   3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 31263 0.71 0.551274
Target:  5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 31351 0.72 0.474027
Target:  5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3'
miRNA:   3'- -GCCGaCGGCaGUGGCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 36270 0.68 0.69163
Target:  5'- gGGCcGCCaccuccGUCGCCGUCGCUGaccaaGCc -3'
miRNA:   3'- gCCGaCGG------CAGUGGCAGCGACga---CGa -5'
13935 5' -60.7 NC_003521.1 + 36811 0.66 0.798169
Target:  5'- gGGCagGCCGUgAucacgcgccacgggCCGgCGCUGCUGUg -3'
miRNA:   3'- gCCGa-CGGCAgU--------------GGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 37783 0.76 0.28317
Target:  5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3'
miRNA:   3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5'
13935 5' -60.7 NC_003521.1 + 38075 0.68 0.69163
Target:  5'- gGGUUGUgGUgGCCGUCGCUG--GCa -3'
miRNA:   3'- gCCGACGgCAgUGGCAGCGACgaCGa -5'
13935 5' -60.7 NC_003521.1 + 41770 0.66 0.79219
Target:  5'- -cGCUGCCGUUACUgguGUCGCUG--GCg -3'
miRNA:   3'- gcCGACGGCAGUGG---CAGCGACgaCGa -5'
13935 5' -60.7 NC_003521.1 + 42275 0.73 0.389773
Target:  5'- gCGGCgucUGUCGUgcCGCCGUguUGCUGCUGCg -3'
miRNA:   3'- -GCCG---ACGGCA--GUGGCA--GCGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.