miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 167293 0.69 0.614509
Target:  5'- aCGGaCUgGCCGUCAUCGUCGCcgGCa--- -3'
miRNA:   3'- -GCC-GA-CGGCAGUGGCAGCGa-CGacga -5'
13935 5' -60.7 NC_003521.1 + 166935 0.67 0.755082
Target:  5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3'
miRNA:   3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 166796 0.76 0.270837
Target:  5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3'
miRNA:   3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 166753 0.68 0.682068
Target:  5'- gCGGC-GCCc-CGCUGgauggCGCUGCUGCg -3'
miRNA:   3'- -GCCGaCGGcaGUGGCa----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 166623 0.7 0.556957
Target:  5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3'
miRNA:   3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164818 0.69 0.624178
Target:  5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3'
miRNA:   3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 164636 0.67 0.747802
Target:  5'- gGGUUaCCGUCGCUggagGUCGCUGUgGCg -3'
miRNA:   3'- gCCGAcGGCAGUGG----CAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 164609 0.66 0.825428
Target:  5'- nCGGUaggaGCUGUCGCCGggaCGCgugGCgGCUg -3'
miRNA:   3'- -GCCGa---CGGCAGUGGCa--GCGa--CGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 164567 0.76 0.295943
Target:  5'- -uGCUGCUGUUGuuGUgGCUGCUGCUg -3'
miRNA:   3'- gcCGACGGCAGUggCAgCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164487 0.73 0.405836
Target:  5'- -cGCaGCCGUCACCGUCGCcuccGCaGCUg -3'
miRNA:   3'- gcCGaCGGCAGUGGCAGCGa---CGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 164452 0.81 0.136983
Target:  5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 164024 0.7 0.604853
Target:  5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3'
miRNA:   3'- gcCGACGGCaGUGGCA------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 163457 0.69 0.653191
Target:  5'- -cGCUGCCGccgccacCACCGUgucCGCUGCcGCUg -3'
miRNA:   3'- gcCGACGGCa------GUGGCA---GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 160776 0.67 0.738622
Target:  5'- aGGCUGCCGcccccuccUC-CCGcCGCgGuCUGCUg -3'
miRNA:   3'- gCCGACGGC--------AGuGGCaGCGaC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 160282 0.69 0.614509
Target:  5'- uGGUaGCCGUCGucgucguacucgUCGUCGCUGCcGCc -3'
miRNA:   3'- gCCGaCGGCAGU------------GGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 155852 0.71 0.491965
Target:  5'- -uGCUGCUGcUC-UCGUUGCUGCUGCa -3'
miRNA:   3'- gcCGACGGC-AGuGGCAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 153872 0.7 0.585599
Target:  5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3'
miRNA:   3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 153372 0.67 0.756892
Target:  5'- -uGCUGCCGUCGCgCG-CGCccgGCgGCg -3'
miRNA:   3'- gcCGACGGCAGUG-GCaGCGa--CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 151862 0.7 0.604853
Target:  5'- gGcGCUGCagaucaGUCGCCGggCGCUguGCUGCa -3'
miRNA:   3'- gC-CGACGg-----CAGUGGCa-GCGA--CGACGa -5'
13935 5' -60.7 NC_003521.1 + 151086 0.69 0.662841
Target:  5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.