miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 204727 0.69 0.624178
Target:  5'- gGGCUGgCGUgGCgCGgcuUCGCgUGCUGCUu -3'
miRNA:   3'- gCCGACgGCAgUG-GC---AGCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 203978 0.73 0.430694
Target:  5'- cCGGCUGCUGcUGCCGUCGCUaCUgGCg -3'
miRNA:   3'- -GCCGACGGCaGUGGCAGCGAcGA-CGa -5'
13935 5' -60.7 NC_003521.1 + 202662 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 202327 0.66 0.808264
Target:  5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3'
miRNA:   3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 201792 0.73 0.405836
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 201601 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 196995 0.66 0.817337
Target:  5'- aGGCgccGCCGccacCACCGUCGCcGCcgGUg -3'
miRNA:   3'- gCCGa--CGGCa---GUGGCAGCGaCGa-CGa -5'
13935 5' -60.7 NC_003521.1 + 195652 0.69 0.662841
Target:  5'- uCGGCgcggucaugGCC-UCGCCGUgGCgUGUUGCUg -3'
miRNA:   3'- -GCCGa--------CGGcAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 193188 0.7 0.608713
Target:  5'- gGGCUcGCCGUCcugauggcccugacgGCCuUCGC-GCUGCUg -3'
miRNA:   3'- gCCGA-CGGCAG---------------UGGcAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 192662 0.69 0.624178
Target:  5'- aGGC-GCUGgaacagCACCGUCaGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCa-----GUGGCAG-CGACGACga -5'
13935 5' -60.7 NC_003521.1 + 192480 0.67 0.738622
Target:  5'- aCGGCggucgGCUGaUCACCGUguccaCGCUGguaCUGCUc -3'
miRNA:   3'- -GCCGa----CGGC-AGUGGCA-----GCGAC---GACGA- -5'
13935 5' -60.7 NC_003521.1 + 191401 0.68 0.710613
Target:  5'- gCGGC-GCUGUCGCCGUCaGC--CUGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAG-CGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 188763 0.68 0.682068
Target:  5'- cCGGCccCgCGUCAuCUGcCGCUGCUGCUc -3'
miRNA:   3'- -GCCGacG-GCAGU-GGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 188154 0.67 0.729358
Target:  5'- -cGCUGCCGgUGCCGcUGCUGCcGCUc -3'
miRNA:   3'- gcCGACGGCaGUGGCaGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 187809 0.69 0.624178
Target:  5'- aCGGCUGCaCGaaGUCGUgGCUGUUGCg -3'
miRNA:   3'- -GCCGACG-GCagUGGCAgCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 187645 0.77 0.25894
Target:  5'- aGGCuguUGCCGcugcUCACCGUCGUcgggaUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGC----AGUGGCAGCG-----ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 180341 0.67 0.738622
Target:  5'- uGGUuucUGCUaGUgGCCGUCGUgacggUGCUGCUc -3'
miRNA:   3'- gCCG---ACGG-CAgUGGCAGCG-----ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 168947 0.82 0.124194
Target:  5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 168610 0.75 0.308489
Target:  5'- gGGCUGCUGggcgugCGCCaucugcuGUUGCUGCUGCg -3'
miRNA:   3'- gCCGACGGCa-----GUGG-------CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 167572 0.71 0.491965
Target:  5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3'
miRNA:   3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.