miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 164791 0.68 0.690117
Target:  5'- ----cGGGCaCgGGUCGUCGGGGacgauCCCg -3'
miRNA:   3'- auuuuCCCGgGgCCAGCGGCCCU-----GGG- -5'
13936 3' -61.2 NC_003521.1 + 93997 0.68 0.684439
Target:  5'- aAGucGGGaaccucgcccUUCCGGagugacgcacauagcUCGCCGGGGCCCg -3'
miRNA:   3'- aUUuuCCC----------GGGGCC---------------AGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 112452 0.68 0.661609
Target:  5'- --cAGGcGGCCCUGGUgggcgcgccCGgCGGGGCCa -3'
miRNA:   3'- auuUUC-CCGGGGCCA---------GCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 167474 0.69 0.652056
Target:  5'- aGAGGGaaGGCCUgaCGGUCGUCGGG-CCg -3'
miRNA:   3'- aUUUUC--CCGGG--GCCAGCGGCCCuGGg -5'
13936 3' -61.2 NC_003521.1 + 6365 0.7 0.58516
Target:  5'- cAGAGGGGCCggucggGGUCGCggaGGGGCgCCg -3'
miRNA:   3'- aUUUUCCCGGgg----CCAGCGg--CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 111364 0.7 0.58516
Target:  5'- ----cGGaUCCCGG-CGCCGGGACUa -3'
miRNA:   3'- auuuuCCcGGGGCCaGCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 43859 0.69 0.623339
Target:  5'- ---cAGGcGCCCCGGcCGgcucCCGGGccgucGCCCa -3'
miRNA:   3'- auuuUCC-CGGGGCCaGC----GGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 91372 0.69 0.623339
Target:  5'- gGAGGGGGCcgaacCCCGG--GCCcGGACCCc -3'
miRNA:   3'- aUUUUCCCG-----GGGCCagCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 144903 0.69 0.623339
Target:  5'- ----cGGGCCCaCGGcaUGCCGGuGGCCg -3'
miRNA:   3'- auuuuCCCGGG-GCCa-GCGGCC-CUGGg -5'
13936 3' -61.2 NC_003521.1 + 43801 0.69 0.627169
Target:  5'- aAGGGGGGCCgCCaugucgcagcagccgGGUCagccgccgccgGCCGcGGGCCCg -3'
miRNA:   3'- aUUUUCCCGG-GG---------------CCAG-----------CGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 131097 0.69 0.632914
Target:  5'- ----cGGGCUCCGGaCGgCGGGGCg- -3'
miRNA:   3'- auuuuCCCGGGGCCaGCgGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 137541 0.73 0.399116
Target:  5'- ------aGCUCCaGGUCGCUGGGGCCCc -3'
miRNA:   3'- auuuuccCGGGG-CCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 111623 0.74 0.383388
Target:  5'- ------aGUCCCGG-CGCCGGGAUCCg -3'
miRNA:   3'- auuuuccCGGGGCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 54169 0.74 0.353191
Target:  5'- aAGGGGGGCgCCGGUgGCgGGGGCg- -3'
miRNA:   3'- aUUUUCCCGgGGCCAgCGgCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 120554 0.75 0.304502
Target:  5'- gGGAAGGGCCCucggcggccggCGGUC-CCGGGggagcGCCCg -3'
miRNA:   3'- aUUUUCCCGGG-----------GCCAGcGGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 153342 0.75 0.297983
Target:  5'- ----uGGGCCCCGG-C-CCGGGcCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGcGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 36292 0.77 0.255368
Target:  5'- gAAGAGGGCCaagaCGGUCG-UGGGGCCg -3'
miRNA:   3'- aUUUUCCCGGg---GCCAGCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 225959 0.77 0.228085
Target:  5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3'
miRNA:   3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 68691 0.78 0.203309
Target:  5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3'
miRNA:   3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 45998 0.66 0.822918
Target:  5'- ---cAGGGUCUCGGccaguccgUCGCgGGGGUCCu -3'
miRNA:   3'- auuuUCCCGGGGCC--------AGCGgCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.