miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 164749 0.75 0.297983
Target:  5'- gAGGGGGGCaUCgCGGUCGCCGGGcgaACCa -3'
miRNA:   3'- aUUUUCCCG-GG-GCCAGCGGCCC---UGGg -5'
13936 3' -61.2 NC_003521.1 + 88658 0.77 0.255368
Target:  5'- -cAGAGGGCCgCCaGGUCgguggGCCGGcGGCCCg -3'
miRNA:   3'- auUUUCCCGG-GG-CCAG-----CGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 153082 0.77 0.249705
Target:  5'- ----cGGGgCCCGG--GCCGGGGCCCa -3'
miRNA:   3'- auuuuCCCgGGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 61831 0.77 0.244146
Target:  5'- -cGAGGGGCCCUGGgagggCGCCGcGGAaCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa----GCGGC-CCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 127835 0.79 0.172568
Target:  5'- gUGGAAGGGCCCCGGcgccagccCGUCGGGcagguuGCCCa -3'
miRNA:   3'- -AUUUUCCCGGGGCCa-------GCGGCCC------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 164935 0.7 0.563397
Target:  5'- ----cGGGCCCCuccuccggcggcucGcGUCGCCGgagaGGGCCCu -3'
miRNA:   3'- auuuuCCCGGGG--------------C-CAGCGGC----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 142957 0.7 0.566225
Target:  5'- --cGGGGGCCCCuGGUCuCCcuGGCCCg -3'
miRNA:   3'- auuUUCCCGGGG-CCAGcGGccCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 93997 0.68 0.684439
Target:  5'- aAGucGGGaaccucgcccUUCCGGagugacgcacauagcUCGCCGGGGCCCg -3'
miRNA:   3'- aUUuuCCC----------GGGGCC---------------AGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 112452 0.68 0.661609
Target:  5'- --cAGGcGGCCCUGGUgggcgcgccCGgCGGGGCCa -3'
miRNA:   3'- auuUUC-CCGGGGCCA---------GCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 167474 0.69 0.652056
Target:  5'- aGAGGGaaGGCCUgaCGGUCGUCGGG-CCg -3'
miRNA:   3'- aUUUUC--CCGGG--GCCAGCGGCCCuGGg -5'
13936 3' -61.2 NC_003521.1 + 131097 0.69 0.632914
Target:  5'- ----cGGGCUCCGGaCGgCGGGGCg- -3'
miRNA:   3'- auuuuCCCGGGGCCaGCgGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 43801 0.69 0.627169
Target:  5'- aAGGGGGGCCgCCaugucgcagcagccgGGUCagccgccgccgGCCGcGGGCCCg -3'
miRNA:   3'- aUUUUCCCGG-GG---------------CCAG-----------CGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 144903 0.69 0.623339
Target:  5'- ----cGGGCCCaCGGcaUGCCGGuGGCCg -3'
miRNA:   3'- auuuuCCCGGG-GCCa-GCGGCC-CUGGg -5'
13936 3' -61.2 NC_003521.1 + 91372 0.69 0.623339
Target:  5'- gGAGGGGGCcgaacCCCGG--GCCcGGACCCc -3'
miRNA:   3'- aUUUUCCCG-----GGGCCagCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 43859 0.69 0.623339
Target:  5'- ---cAGGcGCCCCGGcCGgcucCCGGGccgucGCCCa -3'
miRNA:   3'- auuuUCC-CGGGGCCaGC----GGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 111364 0.7 0.58516
Target:  5'- ----cGGaUCCCGG-CGCCGGGACUa -3'
miRNA:   3'- auuuuCCcGGGGCCaGCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 6365 0.7 0.58516
Target:  5'- cAGAGGGGCCggucggGGUCGCggaGGGGCgCCg -3'
miRNA:   3'- aUUUUCCCGGgg----CCAGCGg--CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 91245 0.7 0.575675
Target:  5'- gGAuGGGGCCCuCGGgguccCGuCCGGGACa- -3'
miRNA:   3'- aUUuUCCCGGG-GCCa----GC-GGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 3666 0.7 0.575675
Target:  5'- ------uGCCUCGG-CgGCCGGGACCCu -3'
miRNA:   3'- auuuuccCGGGGCCaG-CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 59226 0.7 0.572835
Target:  5'- ---cGGGGCCCUGGaCGCCcuggaggugaacguGGGGCUg -3'
miRNA:   3'- auuuUCCCGGGGCCaGCGG--------------CCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.