miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 74158 0.68 0.712658
Target:  5'- ---cGGGGCCCaGGUgccgcuggccgacugCGCCGcGGcGCCCg -3'
miRNA:   3'- auuuUCCCGGGgCCA---------------GCGGC-CC-UGGG- -5'
13936 3' -61.2 NC_003521.1 + 74648 0.66 0.781262
Target:  5'- ----cGGGaCCCUGGagCGCCGcucGGCCCu -3'
miRNA:   3'- auuuuCCC-GGGGCCa-GCGGCc--CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 74860 0.66 0.781262
Target:  5'- --cGAGGcGCgCCGGcCG-CGGGACgCCg -3'
miRNA:   3'- auuUUCC-CGgGGCCaGCgGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 75981 0.66 0.781262
Target:  5'- gAGGAGcGGCCC---UCGCCGGGcGCCg -3'
miRNA:   3'- aUUUUC-CCGGGgccAGCGGCCC-UGGg -5'
13936 3' -61.2 NC_003521.1 + 77253 0.68 0.708923
Target:  5'- ---cGGGGUCCaCGGgguacucgcCGCCGGGcACCa -3'
miRNA:   3'- auuuUCCCGGG-GCCa--------GCGGCCC-UGGg -5'
13936 3' -61.2 NC_003521.1 + 85466 0.73 0.3912
Target:  5'- aGAAAGguggucgucguGGUgCCGGUgcccgcgccccCGCCGGGACCCg -3'
miRNA:   3'- aUUUUC-----------CCGgGGCCA-----------GCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 86213 0.67 0.754807
Target:  5'- -cGAAGGGCggCGGcaCGCCGGcGGCCUu -3'
miRNA:   3'- auUUUCCCGggGCCa-GCGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 88658 0.77 0.255368
Target:  5'- -cAGAGGGCCgCCaGGUCgguggGCCGGcGGCCCg -3'
miRNA:   3'- auUUUCCCGG-GG-CCAG-----CGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 90412 0.68 0.690117
Target:  5'- gAAGGGGGCguaucaguaUCCGG--GCUGGGAUCCg -3'
miRNA:   3'- aUUUUCCCG---------GGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 91245 0.7 0.575675
Target:  5'- gGAuGGGGCCCuCGGgguccCGuCCGGGACa- -3'
miRNA:   3'- aUUuUCCCGGG-GCCa----GC-GGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 91372 0.69 0.623339
Target:  5'- gGAGGGGGCcgaacCCCGG--GCCcGGACCCc -3'
miRNA:   3'- aUUUUCCCG-----GGGCCagCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 92105 0.66 0.814863
Target:  5'- ----cGGuGCCCCgGGUCGgaacccCCGGGugCg -3'
miRNA:   3'- auuuuCC-CGGGG-CCAGC------GGCCCugGg -5'
13936 3' -61.2 NC_003521.1 + 92605 0.66 0.789856
Target:  5'- -cGGAGGGUUCCGGgagCGaggcgggcggaUGGGAUCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa--GCg----------GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 93223 0.66 0.789856
Target:  5'- -uGGGGGGCCCgaUGGU-GCUGGGAUUUu -3'
miRNA:   3'- auUUUCCCGGG--GCCAgCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 93650 0.66 0.806664
Target:  5'- -uGGGGGGUCCgGGUUGCCaaaauuccccuGucccGGACCCc -3'
miRNA:   3'- auUUUCCCGGGgCCAGCGG-----------C----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 93997 0.68 0.684439
Target:  5'- aAGucGGGaaccucgcccUUCCGGagugacgcacauagcUCGCCGGGGCCCg -3'
miRNA:   3'- aUUuuCCC----------GGGGCC---------------AGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 100916 0.66 0.814863
Target:  5'- ----uGGGCUCCGcucgCGUCGGGAuuUCCg -3'
miRNA:   3'- auuuuCCCGGGGCca--GCGGCCCU--GGG- -5'
13936 3' -61.2 NC_003521.1 + 105187 0.66 0.822918
Target:  5'- ----uGGGCCCCc--CGCCgaucguGGGAUCCg -3'
miRNA:   3'- auuuuCCCGGGGccaGCGG------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 107178 0.66 0.814863
Target:  5'- aGAAGGauguGGCUCCGGUUGaccuCGGGugCUu -3'
miRNA:   3'- aUUUUC----CCGGGGCCAGCg---GCCCugGG- -5'
13936 3' -61.2 NC_003521.1 + 111364 0.7 0.58516
Target:  5'- ----cGGaUCCCGG-CGCCGGGACUa -3'
miRNA:   3'- auuuuCCcGGGGCCaGCGGCCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.